Uses of Class
sc.fiji.snt.analysis.NodeCollector

Packages that use NodeCollector

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.

Uses of NodeCollector in sc.fiji.snt.analysis

Methods in sc.fiji.snt.analysis that return NodeCollector

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> NodeCollector<T>	NodeCollector.fromBranchPoints(net.imagej.ImgPlus<T> img, Tree tree)	Convenience factory using the branch points of tree.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> NodeCollector<T>	NodeCollector.fromNodes(net.imagej.ImgPlus<T> img, Tree tree, int everyNth)	Convenience factory sampling every everyNth node across all paths in tree.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> NodeCollector<T>	NodeCollector.fromRoots(net.imagej.ImgPlus<T> img, Collection<Tree> trees)	Convenience factory using the root of every supplied tree.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> NodeCollector<T>	NodeCollector.fromTips(net.imagej.ImgPlus<T> img, Tree tree)	Convenience factory using the tips of tree.
NodeCollector<T>	NodeCollector.setChannel(int channel)	Sets the channel to crop from (0-indexed).
NodeCollector<T>	NodeCollector.setFrame(int frame)	Sets the time frame to crop from (0-indexed).
NodeCollector<T>	NodeCollector.setLabelProvider(Function<SNTPoint,String> labelProvider)	Provides per-crop slice labels (used by getStack() and getMontage(int, int, double, int, boolean) when labels are enabled).
NodeCollector<T>	NodeCollector.setMaterialize(boolean materialize)	If true, crops are materialized to contiguous arrays.
NodeCollector<T>	NodeCollector.setPointsInPixelSpace(boolean pointsInPixelSpace)	If true, the x/y/z of input points are treated as pixel coordinates (no calibration conversion is performed).
NodeCollector<T>	NodeCollector.setProjection(NodeCollector.Projection projection)	Sets the z-projection applied to each crop.
NodeCollector<T>	NodeCollector.setWindow(int wxy, int wz)	Sets the size of the crop window in pixels.
NodeCollector<T>	NodeCollector.setWindow(int wx, int wy, int wz)	Sets the per-axis crop window (X, Y, Z) in pixels.