SNT 5.0.12-SNAPSHOT API

Packages

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.curation	Classes for curation of reconstructions, as implemented by the "Curation Assistant".
sc.fiji.snt.analysis.detection	Feature detectors for traced paths.
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.analysis.growth	Classes for growth analysis of neurites across time
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.
sc.fiji.snt.analysis.sholl.gui	GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
sc.fiji.snt.analysis.sholl.math	Statistical analysis of Sholl data
sc.fiji.snt.analysis.sholl.parsers	Parsers to retrieve Sholl profiles from multiple sources (2D/3D images, reconstructions, and tables)
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.event	Utilities for TrakEM2 interaction
sc.fiji.snt.filter	Filters for detection of tube-like structures
sc.fiji.snt.gui	Customizations and commands for SNT's GUI.
sc.fiji.snt.gui.cmds	Scijava-based GUIs for SNT built-in commands.
sc.fiji.snt.hyperpanes	Classes implementing SNT's XY, ZY, and XZ canvases.
sc.fiji.snt.io	Classes for importing reconstructions into SNT.
sc.fiji.snt.plugin	SNT add-ons as IJ2 commands
sc.fiji.snt.plugin.ij1	SNT add-ons as legacy ("IJ1") plugins.
sc.fiji.snt.seed
sc.fiji.snt.tracing	Path-finding algorithms for interactive neuron tracing.
sc.fiji.snt.tracing.artist	Artist classes provide visual feedback for tracing algorithm execution.
sc.fiji.snt.tracing.auto	Automatic neuron tracing algorithms that reconstruct complete neuronal morphologies from images without user interaction.
sc.fiji.snt.tracing.auto.gwdt	Storage backends for the Gray-Weighted Distance Transform (GWDT) tracing algorithm.
sc.fiji.snt.tracing.cost	Cost function implementations for classes implementing SearchInterface
sc.fiji.snt.tracing.heuristic	Heuristic implementations for classes implementing SearchInterface
sc.fiji.snt.tracing.image	Data structures used to keep track of encountered nodes during image-based searches for classes implementing SearchInterface
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer	Visualization of reconstructions
sc.fiji.snt.viewer.geditor	Classes implementing SNT's Graph Viewer