Uses of Class
sc.fiji.snt.analysis.PCAnalyzer.PrincipalAxis

Packages that use PCAnalyzer.PrincipalAxis

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.viewer	Visualization of reconstructions

Uses of PCAnalyzer.PrincipalAxis in sc.fiji.snt.analysis

Methods in sc.fiji.snt.analysis that return PCAnalyzer.PrincipalAxis

Modifier and Type	Method	Description
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.getPrincipalAxes(Collection<? extends SNTPoint> points)	Computes the principal axes for a collection of SNTPoints.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.getPrincipalAxes(net.imagej.mesh.Vertices vertices)	Computes the principal axes from the vertices of a mesh
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.getPrincipalAxes(Path path)	Computes the principal axes for a Path structure.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.getPrincipalAxes(Tree tree)	Computes the principal axes for a Tree structure.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.getPrincipalAxes(Tree tree, boolean excludeRoot)	Computes the principal axes for a Tree structure with option to exclude root.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.orientTowardDirection(PCAnalyzer.PrincipalAxis[] axes, double[] referenceDirection)	Orients principal axes so the primary axis points toward a reference direction, i.e., the primary axis is oriented to minimize the angle with the reference direction.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.orientTowardTips(PCAnalyzer.PrincipalAxis[] axes, Tree tree)	Convenience method to orient existing principal axes toward a tree's tips centroid.

Methods in sc.fiji.snt.analysis with parameters of type PCAnalyzer.PrincipalAxis

Modifier and Type	Method	Description
static double[]	PCAnalyzer.getVariancePercentages(PCAnalyzer.PrincipalAxis[] axes)	Computes the variance percentages for an array of principal axes.
static double[]	PCAnalyzer.PrincipalAxis.getVariancePercentages(PCAnalyzer.PrincipalAxis[] axes)	Computes the variance percentages for an array of principal axes.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.orientTowardDirection(PCAnalyzer.PrincipalAxis[] axes, double[] referenceDirection)	Orients principal axes so the primary axis points toward a reference direction, i.e., the primary axis is oriented to minimize the angle with the reference direction.
static PCAnalyzer.PrincipalAxis[]	PCAnalyzer.orientTowardTips(PCAnalyzer.PrincipalAxis[] axes, Tree tree)	Convenience method to orient existing principal axes toward a tree's tips centroid.

Uses of PCAnalyzer.PrincipalAxis in sc.fiji.snt.viewer

Methods in sc.fiji.snt.viewer that return PCAnalyzer.PrincipalAxis

Modifier and Type	Method	Description
PCAnalyzer.PrincipalAxis[]	OBJMesh.computePrincipalAxes(String hemiHalf)	Computes the principal axes of this mesh using the new PCAnalyzer.
PCAnalyzer.PrincipalAxis[]	OBJMesh.getPrincipalAxes(String hemiHalf)	Computes the principal axes of the mesh using Principal Component Analysis (PCA).