Package sc.fiji.snt.analysis.curation

Class CurationHistograms

java.lang.Object

sc.fiji.snt.analysis.curation.CurationHistograms

public final class CurationHistograms
extends Object

Factory for the small histogram buttons sitting next to threshold spinners in the Curation Assistant. Clicking the button shows the distribution of the corresponding check's metric across the current reconstruction(s), with a marker at the configured threshold and the flagged region lightly shaded.

Author:

Tiago Ferreira

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	CurationHistograms.Side	Defines Which side of the threshold(s) constitutes a flagged value.

Method Summary

Modifier and Type	Method	Description
static JButton	button(String checkName, Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn, Supplier<Collection<Path>> pathsSnapshot, DoubleSupplier primaryThreshold, DoubleSupplier secondaryThreshold, CurationHistograms.Side side, Component parent)	Histogram button supporting both single- and two-threshold checks.
static JButton	button(String checkName, Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn, Supplier<Collection<Path>> pathsSnapshot, DoubleSupplier threshold, CurationHistograms.Side side, Component parent)	Single-sided histogram button (LEFT_FLAGGED or RIGHT_FLAGGED).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

button

public static JButton button(String checkName,
 Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn,
 Supplier<Collection<Path>> pathsSnapshot,
 DoubleSupplier threshold,
 CurationHistograms.Side side,
 Component parent)

Single-sided histogram button (LEFT_FLAGGED or RIGHT_FLAGGED).

Parameters:

checkName - short name used in the popup title and empty-state message

measureFn - function that produces the measurement set from a path collection; called on a background thread

pathsSnapshot - supplier that returns a snapshot of the current paths; called on the EDT before the worker starts, so it can safely iterate the live path list

threshold - supplier of the current spinner value (called on EDT)

side - which side of the threshold is flagged

parent - component used to position the empty-state dialog (nullable)

Returns:

the small icon button, ready to be added to a row

button

public static JButton button(String checkName,
 Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn,
 Supplier<Collection<Path>> pathsSnapshot,
 DoubleSupplier primaryThreshold,
 DoubleSupplier secondaryThreshold,
 CurationHistograms.Side side,
 Component parent)

Histogram button supporting both single- and two-threshold checks. Pass secondaryThreshold == null for single-sided checks; pass both suppliers for CurationHistograms.Side.OUTSIDE_FLAGGED (e.g., PlausibilityCheck.BranchAngle, which has min and max spinners).