Package sc.fiji.snt.analysis.curation

Class PlausibilityCheck.InvalidRadius

java.lang.Object

sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

sc.fiji.snt.analysis.curation.PlausibilityCheck.InvalidRadius

Enclosing class:

PlausibilityCheck

public static class PlausibilityCheck.InvalidRadius
extends PlausibilityCheck.DeepCheck

Flags nodes whose radius is zero, negative, or NaN. These usually indicate radii that were never fitted (e.g., path edited after fitting) or that the fitter could not assess. Previously surfaced as a manual "Bookmark QC Locations" command in the Path Manager toolbar.

Constructor Summary

Constructors

Constructor	Description
InvalidRadius()

Method Summary

Modifier and Type	Method	Description
String	getName()
PlausibilityCheck.Measurements	measure(Collection<Path> paths)	Computes the full distribution of this check's metric across paths, without applying the warning threshold.
List<PlausibilityCheck.Warning>	scan(Collection<Path> paths)	Scans a collection of paths for plausibility issues.

Methods inherited from class sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

impactKind, isEnabled, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

InvalidRadius

public InvalidRadius()

Method Details

getName

public String getName()

Specified by:

getName in class PlausibilityCheck.DeepCheck

Returns:

a short human-readable name for this check

scan

public List<PlausibilityCheck.Warning> scan(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Scans a collection of paths for plausibility issues.

Specified by:

scan in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to scan

Returns:

list of warnings (empty if no issues found)

measure

public PlausibilityCheck.Measurements measure(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Computes the full distribution of this check's metric across paths, without applying the warning threshold. Default implementation returns PlausibilityCheck.Measurements.EMPTY; subclasses override to enable per-check histogram popups in the Curation Assistant.

Overrides:

measure in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to evaluate; null or empty yields PlausibilityCheck.Measurements.EMPTY.

Returns:

a PlausibilityCheck.Measurements record; never null.