Package sc.fiji.snt.analysis.curation

Class PlausibilityCheck.PathOverlap

java.lang.Object

sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

sc.fiji.snt.analysis.curation.PlausibilityCheck.PathOverlap

Enclosing class:

PlausibilityCheck

public static class PlausibilityCheck.PathOverlap
extends PlausibilityCheck.DeepCheck

Detects paths that run very close to each other without being topologically connected. Wraps CrossoverFinder.

Constructor Summary

Constructors

Constructor	Description
PathOverlap()

Method Summary

Modifier and Type	Method	Description
String	getName()
double	getProximityUm()
List<PlausibilityCheck.Warning>	scan(Collection<Path> paths)	Scans a collection of paths for plausibility issues.
void	setProximityUm(double um)

Methods inherited from class sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

isEnabled, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PathOverlap

public PathOverlap()

Method Details

getName

public String getName()

Specified by:

getName in class PlausibilityCheck.DeepCheck

Returns:

a short human-readable name for this check

setProximityUm

public void setProximityUm(double um)

getProximityUm

public double getProximityUm()

scan

public List<PlausibilityCheck.Warning> scan(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Scans a collection of paths for plausibility issues.

Specified by:

scan in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to scan

Returns:

list of warnings (empty if no issues found)