Package sc.fiji.snt.analysis.curation

Class PlausibilityCheck.RadiusJumps

java.lang.Object

sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

sc.fiji.snt.analysis.curation.PlausibilityCheck.RadiusJumps

Enclosing class:

PlausibilityCheck

public static class PlausibilityCheck.RadiusJumps
extends PlausibilityCheck.DeepCheck

Detects abrupt radius jumps between adjacent nodes within a path.

Constructor Summary

Constructors

Constructor	Description
RadiusJumps()

Method Summary

Modifier and Type	Method	Description
double	getMaxJumpRatio()
String	getName()
PlausibilityCheck.Measurements	measure(Collection<Path> paths)	Computes the full distribution of this check's metric across paths, without applying the warning threshold.
List<PlausibilityCheck.Warning>	scan(Collection<Path> paths)	Scans a collection of paths for plausibility issues.
void	setMaxJumpRatio(double ratio)

Methods inherited from class sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

impactKind, isEnabled, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RadiusJumps

public RadiusJumps()

Method Details

getName

public String getName()

Specified by:

getName in class PlausibilityCheck.DeepCheck

Returns:

a short human-readable name for this check

setMaxJumpRatio

public void setMaxJumpRatio(double ratio)

getMaxJumpRatio

public double getMaxJumpRatio()

scan

public List<PlausibilityCheck.Warning> scan(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Scans a collection of paths for plausibility issues.

Specified by:

scan in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to scan

Returns:

list of warnings (empty if no issues found)

measure

public PlausibilityCheck.Measurements measure(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Computes the full distribution of this check's metric across paths, without applying the warning threshold. Default implementation returns PlausibilityCheck.Measurements.EMPTY; subclasses override to enable per-check histogram popups in the Curation Assistant.

Overrides:

measure in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to evaluate; null or empty yields PlausibilityCheck.Measurements.EMPTY.

Returns:

a PlausibilityCheck.Measurements record; never null.