Package sc.fiji.snt.analysis.curation

Class PlausibilityCheck.RadiusMonotonicity

java.lang.Object

sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

sc.fiji.snt.analysis.curation.PlausibilityCheck.RadiusMonotonicity

Enclosing class:

PlausibilityCheck

public static class PlausibilityCheck.RadiusMonotonicity
extends PlausibilityCheck.DeepCheck

Detects sustained radius increases along a path (neurites should generally taper distally).

Constructor Summary

Constructors

Constructor	Description
RadiusMonotonicity()

Method Summary

Modifier and Type	Method	Description
int	getMinIncreasingRun()
String	getName()
PlausibilityCheck.Measurements	measure(Collection<Path> paths)	Collects every monotonic-increase run of length >= 2 (regardless of the current minIncreasingRun threshold) so the histogram shows the full distribution of run lengths in the reconstruction.
List<PlausibilityCheck.Warning>	scan(Collection<Path> paths)	Scans a collection of paths for plausibility issues.
void	setMinIncreasingRun(int n)

Methods inherited from class sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck

impactKind, isEnabled, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RadiusMonotonicity

public RadiusMonotonicity()

Method Details

getName

public String getName()

Specified by:

getName in class PlausibilityCheck.DeepCheck

Returns:

a short human-readable name for this check

setMinIncreasingRun

public void setMinIncreasingRun(int n)

getMinIncreasingRun

public int getMinIncreasingRun()

scan

public List<PlausibilityCheck.Warning> scan(Collection<Path> paths)

Description copied from class: PlausibilityCheck.DeepCheck

Scans a collection of paths for plausibility issues.

Specified by:

scan in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to scan

Returns:

list of warnings (empty if no issues found)

measure

public PlausibilityCheck.Measurements measure(Collection<Path> paths)

Collects every monotonic-increase run of length >= 2 (regardless of the current minIncreasingRun threshold) so the histogram shows the full distribution of run lengths in the reconstruction.

Overrides:

measure in class PlausibilityCheck.DeepCheck

Parameters:

paths - the paths to evaluate; null or empty yields PlausibilityCheck.Measurements.EMPTY.

Returns:

a PlausibilityCheck.Measurements record; never null.