Package sc.fiji.snt.analysis.curation

Class PlausibilityCheck.TortuosityConsistency

java.lang.Object

sc.fiji.snt.analysis.curation.PlausibilityCheck.LiveCheck

sc.fiji.snt.analysis.curation.PlausibilityCheck.TortuosityConsistency

Enclosing class:

PlausibilityCheck

public static class PlausibilityCheck.TortuosityConsistency
extends PlausibilityCheck.LiveCheck

Warns when child and parent have very different tortuosity (contraction).

Constructor Summary

Constructors

Constructor	Description
TortuosityConsistency()

Method Summary

Modifier and Type	Method	Description
List<PlausibilityCheck.Warning>	check(Path parent, Path child, int branchIndex)	Evaluates the plausibility of a child path forking from a parent.
double	getMaxContractionDiff()
String	getName()
PlausibilityCheck.Measurements	measure(Collection<Path> paths)	Computes the full distribution of this check's metric across paths, without applying the warning threshold.
void	setMaxContractionDiff(double diff)

Methods inherited from class sc.fiji.snt.analysis.curation.PlausibilityCheck.LiveCheck

impactKind, isEnabled, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TortuosityConsistency

public TortuosityConsistency()

Method Details

getName

public String getName()

Specified by:

getName in class PlausibilityCheck.LiveCheck

Returns:

a short human-readable name for this check

setMaxContractionDiff

public void setMaxContractionDiff(double diff)

getMaxContractionDiff

public double getMaxContractionDiff()

check

public List<PlausibilityCheck.Warning> check(Path parent,
 Path child,
 int branchIndex)

Description copied from class: PlausibilityCheck.LiveCheck

Evaluates the plausibility of a child path forking from a parent.

Specified by:

check in class PlausibilityCheck.LiveCheck

Parameters:

parent - the parent path

child - the child (candidate) path

branchIndex - the node index in the parent where the fork occurs

Returns:

list of warnings (empty if the operation is plausible)

measure

public PlausibilityCheck.Measurements measure(Collection<Path> paths)

Description copied from class: PlausibilityCheck.LiveCheck

Computes the full distribution of this check's metric across paths, without applying the warning threshold. Default implementation returns PlausibilityCheck.Measurements.EMPTY; subclasses override to enable per-check histogram popups in the Curation Assistant.

Overrides:

measure in class PlausibilityCheck.LiveCheck

Parameters:

paths - the paths to evaluate; null or empty yields PlausibilityCheck.Measurements.EMPTY.

Returns:

a PlausibilityCheck.Measurements record; never null.