Package sc.fiji.snt.gui.cmds

Class ChooseDatasetCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.gui.cmds.CommonDynamicCmd

sc.fiji.snt.gui.cmds.ChooseDatasetCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

Direct Known Subclasses:

LoadSeedsFromLabelsImageCmd

public class ChooseDatasetCmd
extends CommonDynamicCmd

Implements the 'Choose Tracing Image (From Open Image)...' command.

Author:

Tiago Ferreira

Field Summary

Fields inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

EMPTY_LABEL, HEADER_HTML, snt, sntService, statusService, ui, uiService

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
ChooseDatasetCmd()

Method Summary

Modifier and Type	Method	Description
protected static ij.ImagePlus	convertInPlaceToCompositeAsNeeded(SNTUI ui, ij.ImagePlus imp)
static ij.ImagePlus	getCurrentImage()
static Collection<ij.ImagePlus>	getImpInstances()
protected void	init()
protected boolean	isCalibrationCompatible(ij.ImagePlus chosenImp)
static void	main(String... args)
protected boolean	populateImpChoices(Predicate<ij.ImagePlus> accept)	Populates impMap and the "choice" parameter's widget with the titles of all open ImagePlus instances, excluding the SNT main tracing image (when present) and any image rejected by the optional filter.
void	run()

Methods inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

cancel, cancel, error, getPromptWithCloseHandler, getPromptWithCloseHandler, init, isCanceled, msg, notifyExternalDataLoaded, notifyLoadingEnd, notifyLoadingStart, resetUI, resetUI, resetUI, status

Methods inherited from class org.scijava.command.DynamicCommand

context, getCancelReason, getContext, getInfo, getInput, getOutput, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Constructor Details

ChooseDatasetCmd

public ChooseDatasetCmd()

Method Details

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class CommonDynamicCmd

isCalibrationCompatible

protected boolean isCalibrationCompatible(ij.ImagePlus chosenImp)

init

protected void init()

populateImpChoices

protected boolean populateImpChoices(Predicate<ij.ImagePlus> accept)

Populates impMap and the "choice" parameter's widget with the titles of all open ImagePlus instances, excluding the SNT main tracing image (when present) and any image rejected by the optional filter. Also updates accessToValidImagePlus.

Parameters:

accept - optional predicate; only images for which accept.test(imp) is true are included. null accepts every open image other than the tracing image.

Returns:

true if at least one candidate remains; false if none are available, in which case noImgsOpenError() has already been called.

getImpInstances

public static Collection<ij.ImagePlus> getImpInstances()

getCurrentImage

public static ij.ImagePlus getCurrentImage()

convertInPlaceToCompositeAsNeeded

protected static ij.ImagePlus convertInPlaceToCompositeAsNeeded(SNTUI ui,
 ij.ImagePlus imp)

main

public static void main(String... args)