Package sc.fiji.snt.plugin

Class RootAngleAnalyzerCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.gui.cmds.CommonDynamicCmd

sc.fiji.snt.plugin.RootAngleAnalyzerCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class RootAngleAnalyzerCmd
extends CommonDynamicCmd

Command to perform Root angle analysis on a collection of Trees

Author:

Tiago Ferreira

See Also:

• RootAngleAnalyzer

Field Summary

Fields inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

EMPTY_LABEL, HEADER_HTML, snt, statusService, ui, uiService

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
RootAngleAnalyzerCmd()	Instantiates a new RootAngleAnalyzerCmd.
RootAngleAnalyzerCmd(Collection<Tree> trees)	Instantiates a new RootAngleAnalyzerCmd.
RootAngleAnalyzerCmd(Tree tree)	Instantiates a new RootAngleAnalyzerCmd for a single Tree

Method Summary

Modifier and Type	Method	Description
SNTTable	getSummaryTable()	Gets the summary table containing the tabular results of the analysis.
void	run()

Methods inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

cancel, cancel, error, getPromptWithCloseHandler, getPromptWithCloseHandler, init, isCanceled, msg, notifyExternalDataLoaded, notifyLoadingEnd, notifyLoadingStart, resetUI, resetUI, resetUI, status

Methods inherited from class org.scijava.command.DynamicCommand

context, getCancelReason, getContext, getInfo, getInput, getOutput, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Constructor Details

RootAngleAnalyzerCmd

public RootAngleAnalyzerCmd()

Instantiates a new RootAngleAnalyzerCmd. Trees to be analyzed expected as input @parameter

RootAngleAnalyzerCmd

public RootAngleAnalyzerCmd(Collection<Tree> trees)

Instantiates a new RootAngleAnalyzerCmd.

Parameters:

trees - the collection of Trees to be analyzed

RootAngleAnalyzerCmd

public RootAngleAnalyzerCmd(Tree tree)

Instantiates a new RootAngleAnalyzerCmd for a single Tree

Parameters:

tree - the single Tree to be analyzed

Method Details

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class CommonDynamicCmd

getSummaryTable

public SNTTable getSummaryTable()

Gets the summary table containing the tabular results of the analysis.

Returns:

the summary table