Package sc.fiji.snt.plugin

Class TimeProfiler

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.gui.cmds.CommonDynamicCmd

sc.fiji.snt.analysis.PathProfiler

sc.fiji.snt.plugin.TimeProfiler

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class TimeProfiler
extends PathProfiler

Command for generating kymograph-style intensity profiles across time.

Author:

Tiago Ferreira

See Also:

• PathTimeAnalysisCmd
• PathProfiler

Nested Class Summary

Nested classes/interfaces inherited from class sc.fiji.snt.analysis.PathProfiler

PathProfiler.SNTPlot

Field Summary

Fields inherited from class sc.fiji.snt.analysis.PathProfiler

CIRCLE2D, CIRCLE3D, dataset, DISK2D, DISK3D, LINE2D, LINE3D, NONE, SPHERE, tree, usePhysicalUnits, X_VALUES, Y_VALUES

Fields inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

EMPTY_LABEL, HEADER_HTML, snt, sntService, statusService, ui, uiService

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
TimeProfiler()

Method Summary

Modifier and Type	Method	Description
protected void	init()
void	run()

Methods inherited from class sc.fiji.snt.analysis.PathProfiler

assignValues, assignValues, assignValues, assignValues, assignValues, evalParameters, findMaxima, findMinima, getChannels, getMultiFrameProfile, getPlot, getPlot, getPlot, getResampledValues, getResampledValues, getTimeProfile, getValues, getValues, getValues, getXAxisLabel, getXYPlot, getXYPlot, getYAxisLabel, main, setMetric, setNodeIndicesAsDistances, setRadius, setShape

Methods inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

cancel, cancel, error, getPromptWithCloseHandler, getPromptWithCloseHandler, init, isCanceled, msg, notifyExternalDataLoaded, notifyLoadingEnd, notifyLoadingStart, resetUI, resetUI, resetUI, status

Methods inherited from class org.scijava.command.DynamicCommand

context, getCancelReason, getContext, getInfo, getInput, getOutput, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Constructor Details

TimeProfiler

public TimeProfiler()

Method Details

init

protected void init()

Overrides:

init in class PathProfiler

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class PathProfiler