Package sc.fiji.snt.plugin.ij1

Class SummarizeSkeleton

java.lang.Object
sc.fiji.snt.plugin.ij1.SummarizeSkeleton
All Implemented Interfaces:
ij.plugin.filter.PlugInFilter
public class SummarizeSkeleton extends Object implements ij.plugin.filter.PlugInFilter
This class implements the Summarize Skeleton command. It takes a skeletonized image and aggregates combined statistics for all the connected components in the image. Measurements are displayed to a dedicated table. Useful when a skeletonized mask of a single structure is not contiguous but still needs to be measured as a single structure. It was originally part of hINAPT.
Author:
Tiago Ferreira

  • Field Summary

    Fields inherited from interface ij.plugin.filter.PlugInFilter

    CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

  • Constructor Summary

    Constructors
    Constructor
    Description
    SummarizeSkeleton()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    run(ij.process.ImageProcessor ignored)
     
    int
    setup(String arg, ij.ImagePlus imp)
     

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • SummarizeSkeleton

      public SummarizeSkeleton()

  • Method Details

    • setup

      public int setup(String arg, ij.ImagePlus imp)
      Specified by:
      setup in interface ij.plugin.filter.PlugInFilter

    • run

      public void run(ij.process.ImageProcessor ignored)
      Specified by:
      run in interface ij.plugin.filter.PlugInFilter