Package sc.fiji.snt.tracing

Class TubularGeodesicsTracer

java.lang.Object

java.lang.Thread

sc.fiji.snt.tracing.TubularGeodesicsTracer

All Implemented Interfaces:

Runnable, SearchInterface

public class TubularGeodesicsTracer
extends Thread
implements SearchInterface

A tracer thread for FijiITKInterface.TubularGeodesics (assumes the tubularity add-on to be installed)

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
protected float	end_x_image
protected float	end_y_image
protected float	end_z_image
protected sc.fiji.snt.tracing.PathResult	lastPathResult
protected File	oofFile
protected ArrayList<SearchProgressCallback>	progressListeners
protected String	spacing_units
protected float	start_x_image
protected float	start_y_image
protected float	start_z_image
protected double	x_spacing
protected double	y_spacing
protected double	z_spacing

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
TubularGeodesicsTracer(File oofFile, float start_x_image, float start_y_image, float start_z_image, float end_x_image, float end_y_image, float end_z_image, double x_spacing, double y_spacing, double z_spacing, String spacing_units)

Method Summary

Modifier and Type	Method	Description
void	addProgressListener(SearchProgressCallback callback)
Path	getResult()
void	reportFinished(boolean success)
void	reportProgress(float proportionDone)
void	requestStop()
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

x_spacing

protected double x_spacing

y_spacing

protected double y_spacing

z_spacing

protected double z_spacing

spacing_units

protected String spacing_units

oofFile

protected File oofFile

start_x_image

protected float start_x_image

start_y_image

protected float start_y_image

start_z_image

protected float start_z_image

end_x_image

protected float end_x_image

end_y_image

protected float end_y_image

end_z_image

protected float end_z_image

lastPathResult

protected sc.fiji.snt.tracing.PathResult lastPathResult

progressListeners

protected ArrayList<SearchProgressCallback> progressListeners

Constructor Details

TubularGeodesicsTracer

public TubularGeodesicsTracer(File oofFile,
 float start_x_image,
 float start_y_image,
 float start_z_image,
 float end_x_image,
 float end_y_image,
 float end_z_image,
 double x_spacing,
 double y_spacing,
 double z_spacing,
 String spacing_units)

Method Details

getResult

public Path getResult()

Specified by:

getResult in interface SearchInterface

addProgressListener

public void addProgressListener(SearchProgressCallback callback)

reportProgress

public void reportProgress(float proportionDone)

requestStop

public void requestStop()

run

public void run()

Specified by:

run in interface Runnable

Overrides:

run in class Thread

reportFinished

public void reportFinished(boolean success)