Uses of Class
sc.fiji.snt.tracing.auto.AbstractGWDTTracer

Packages that use AbstractGWDTTracer

Package	Description
sc.fiji.snt.plugin	SNT add-ons as IJ2 commands
sc.fiji.snt.tracing.auto	Automatic neuron tracing algorithms that reconstruct complete neuronal morphologies from images without user interaction.

Uses of AbstractGWDTTracer in sc.fiji.snt.plugin

Methods in sc.fiji.snt.plugin that return AbstractGWDTTracer

Modifier and Type	Method	Description
protected AbstractGWDTTracer<?>	AutotraceFromTipsCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img)	Extends the parent's tracer setup with a setTips call.
protected AbstractGWDTTracer<?>	AutotraceFromWaypointsCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img)	Extends the parent's tracer setup with bias configuration and a setWaypoints call.
protected AbstractGWDTTracer<?>	GWDTTracerCommonCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img)	Creates and configures a tracer from the shared GUI parameters.

Methods in sc.fiji.snt.plugin with parameters of type AbstractGWDTTracer

Modifier and Type	Method	Description
protected boolean	GWDTTracerCommonCmd.configureSecondaryScoreMap(AbstractGWDTTracer<?> tracer)	Hook for configuring the tracer's score map from a user-supplied secondary image.
protected boolean	GWDTTracerFileCmd.configureSecondaryScoreMap(AbstractGWDTTracer<?> tracer)	Locates a paired secondary image on disk via GWDTTracerFileCmd.secondaryImageSuffix.

Uses of AbstractGWDTTracer in sc.fiji.snt.tracing.auto

Subclasses of AbstractGWDTTracer in sc.fiji.snt.tracing.auto

Modifier and Type	Class	Description
class	DiskBackedGWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>	Disk-backed GWDT tracer for very large images.
class	GWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>	In-memory GWDT tracer using array storage.
class	SparseGWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>	Sparse GWDT tracer using hash map storage for memory efficiency.

Methods in sc.fiji.snt.tracing.auto that return AbstractGWDTTracer

Modifier and Type	Method	Description
static AbstractGWDTTracer<?>	GWDTTracerFactory.create(ij.ImagePlus source)	Creates the optimal GWDT tracer from an ImagePlus.
static AbstractGWDTTracer<?>	GWDTTracerFactory.create(net.imagej.ImgPlus<?> source)	Creates the optimal GWDT tracer from an ImgPlus.
static AbstractGWDTTracer<?>	GWDTTracerFactory.create(net.imglib2.RandomAccessibleInterval<?> source, double[] spacing)	Creates the optimal GWDT tracer for the given image.
static AbstractGWDTTracer<?>	GWDTTracerFactory.create(net.imglib2.RandomAccessibleInterval<?> source, double[] spacing, long sparseThresholdMB, long diskThresholdMB)	Creates optimal tracer with manual threshold override.

Methods in sc.fiji.snt.tracing.auto with parameters of type AbstractGWDTTracer

Modifier and Type	Method	Description
<T extends net.imglib2.type.numeric.RealType<T>> void	AutoTraceConfig.applyTo(AbstractGWDTTracer<T> tracer)	Applies this configuration to a tracer, setting all derived parameters.