Uses of Class
sc.fiji.snt.tracing.auto.AbstractGWDTTracer
Packages that use AbstractGWDTTracer
Package
Description
SNT add-ons as IJ2 commands
Automatic neuron tracing algorithms that reconstruct complete neuronal
morphologies from images without user interaction.
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Uses of AbstractGWDTTracer in sc.fiji.snt.plugin
Methods in sc.fiji.snt.plugin that return AbstractGWDTTracerModifier and TypeMethodDescriptionprotected AbstractGWDTTracer<?> AutotraceFromTipsCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img) Extends the parent's tracer setup with asetTipscall.protected AbstractGWDTTracer<?> AutotraceFromWaypointsCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img) Extends the parent's tracer setup with bias configuration and asetWaypointscall.protected AbstractGWDTTracer<?> GWDTTracerCommonCmd.createAndConfigureTracer(net.imagej.ImgPlus<?> img) Creates and configures a tracer from the shared GUI parameters.Methods in sc.fiji.snt.plugin with parameters of type AbstractGWDTTracerModifier and TypeMethodDescriptionprotected booleanGWDTTracerCommonCmd.configureSecondaryScoreMap(AbstractGWDTTracer<?> tracer) Hook for configuring the tracer's score map from a user-supplied secondary image.protected booleanGWDTTracerFileCmd.configureSecondaryScoreMap(AbstractGWDTTracer<?> tracer) Locates a paired secondary image on disk viaGWDTTracerFileCmd.secondaryImageSuffix. -
Uses of AbstractGWDTTracer in sc.fiji.snt.tracing.auto
Subclasses of AbstractGWDTTracer in sc.fiji.snt.tracing.autoModifier and TypeClassDescriptionclassDiskBackedGWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>Disk-backed GWDT tracer for very large images.classGWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>In-memory GWDT tracer using array storage.classSparseGWDTTracer<T extends net.imglib2.type.numeric.RealType<T>>Sparse GWDT tracer using hash map storage for memory efficiency.Methods in sc.fiji.snt.tracing.auto that return AbstractGWDTTracerModifier and TypeMethodDescriptionstatic AbstractGWDTTracer<?> GWDTTracerFactory.create(ij.ImagePlus source) Creates the optimal GWDT tracer from an ImagePlus.static AbstractGWDTTracer<?> GWDTTracerFactory.create(net.imagej.ImgPlus<?> source) Creates the optimal GWDT tracer from an ImgPlus.static AbstractGWDTTracer<?> GWDTTracerFactory.create(net.imglib2.RandomAccessibleInterval<?> source, double[] spacing) Creates the optimal GWDT tracer for the given image.static AbstractGWDTTracer<?> GWDTTracerFactory.create(net.imglib2.RandomAccessibleInterval<?> source, double[] spacing, long sparseThresholdMB, long diskThresholdMB) Creates optimal tracer with manual threshold override.Methods in sc.fiji.snt.tracing.auto with parameters of type AbstractGWDTTracerModifier and TypeMethodDescription<T extends net.imglib2.type.numeric.RealType<T>>
voidAutoTraceConfig.applyTo(AbstractGWDTTracer<T> tracer) Applies this configuration to a tracer, setting all derived parameters.