Package sc.fiji.snt.viewer.geditor

Class AnnotationGraphAdapter

java.lang.Object
com.mxgraph.util.mxEventSource
com.mxgraph.view.mxGraph
org.jgrapht.ext.JGraphXAdapter<BrainAnnotation,AnnotationWeightedEdge>
sc.fiji.snt.viewer.geditor.SNTGraphAdapter<BrainAnnotation,AnnotationWeightedEdge>
sc.fiji.snt.viewer.geditor.AnnotationGraphAdapter
All Implemented Interfaces:
EventListener, org.jgrapht.event.GraphListener<BrainAnnotation,AnnotationWeightedEdge>, org.jgrapht.event.VertexSetListener<BrainAnnotation>
public class AnnotationGraphAdapter extends SNTGraphAdapter<BrainAnnotation,AnnotationWeightedEdge>
JGraphX adapter for visualizing annotation graphs with brain structures as vertices. Configures styling and color management for anatomy-based network graphs in the SNT graph editor.

  • Nested Class Summary

    Nested classes/interfaces inherited from class com.mxgraph.view.mxGraph

    com.mxgraph.view.mxGraph.mxICellVisitor

    Nested classes/interfaces inherited from class com.mxgraph.util.mxEventSource

    com.mxgraph.util.mxEventSource.mxIEventListener

  • Field Summary

    Fields inherited from class sc.fiji.snt.viewer.geditor.SNTGraphAdapter

    cGraph

    Fields inherited from class com.mxgraph.view.mxGraph

    allowDanglingEdges, allowLoops, allowNegativeCoordinates, alternateEdgeStyle, autoOrigin, autoSizeCells, border, cellsBendable, cellsCloneable, cellsDeletable, cellsDisconnectable, cellsEditable, cellsLocked, cellsMovable, cellsResizable, cellsSelectable, changesRepaintThreshold, changeSupport, cloneInvalidEdges, collapseToPreferredSize, connectableEdges, constrainChildren, defaultLoopStyle, defaultOverlap, defaultParent, disconnectOnMove, dropEnabled, edgeLabelsMovable, enabled, extendParents, extendParentsOnAdd, fullRepaintHandler, graphModelChangeHandler, gridEnabled, gridSize, htmlLabels, imageBundles, keepEdgesInBackground, keepEdgesInForeground, labelsClipped, labelsVisible, maximumGraphBounds, minimumGraphSize, model, multigraph, multiplicities, origin, portsEnabled, resetEdgesOnConnect, resetEdgesOnMove, resetEdgesOnResize, resetViewOnRootChange, selectionModel, splitEnabled, stylesheet, swimlaneNesting, updateOriginHandler, VERSION, vertexLabelsMovable, view

    Fields inherited from class com.mxgraph.util.mxEventSource

    eventListeners, eventsEnabled, eventSource

  • Constructor Summary

    Constructors
    Modifier
    Constructor
    Description
     
    AnnotationGraphAdapter(AnnotationGraph graph)
     
    protected
    AnnotationGraphAdapter(AnnotationGraph graph, String verticesColor)
     

  • Method Summary

    Modifier and Type
    Method
    Description
    String
    convertValueToString(Object cell)
     
    AnnotationGraph
    getAnnotationGraph()
     
    String
    getToolTipForCell(Object cell)
     
    void
    setEdgeColor(AnnotationWeightedEdge edge, org.scijava.util.ColorRGB color)
     
    void
    setVertexColor(BrainAnnotation vertex, org.scijava.util.ColorRGB color)
     

    Methods inherited from class sc.fiji.snt.viewer.geditor.SNTGraphAdapter

    cellLabelChanged, getOriginalValueOfmxCell, getSourceGraph, isEdgeLabelsEnabled, isVertexLabelsEnabled, scaleEdgeWidths, setCellColorsFromGraph, setEnableEdgeLabels, setEnableVertexLabels

    Methods inherited from class org.jgrapht.ext.JGraphXAdapter

    edgeAdded, edgeRemoved, getCellToEdgeMap, getCellToVertexMap, getEdgeToCellMap, getVertexToCellMap, vertexAdded, vertexRemoved

    Methods inherited from class com.mxgraph.view.mxGraph

    addAllEdges, addCell, addCell, addCell, addCells, addCells, addCells, addCells, addEdge, addImageBundle, addPropertyChangeListener, addPropertyChangeListener, addSelectionCell, addSelectionCells, addTopmostVerticesAndEdges, alignCells, alignCells, alignCells, cellConnected, cellDrawn, cellsAdded, cellsAdded, cellsFolded, cellsFolded, cellSizeUpdated, cellsMoved, cellsOrdered, cellsRemoved, cellsResized, cellsToggled, clearSelection, cloneCells, cloneCells, connectCell, connectCell, constrainChild, createEdge, createGraphView, createGroupCell, createSelectionModel, createStylesheet, createVertex, createVertex, disconnectGraph, drawCell, drawGraph, drawState, enterGroup, enterGroup, exitGroup, extendParent, findTreeRoots, findTreeRoots, findTreeRoots, flipEdge, foldCells, foldCells, foldCells, foldCells, getAllConnectionConstraints, getAllEdges, getAlternateEdgeStyle, getBorder, getBoundingBox, getBoundingBox, getBoundingBox, getBoundingBoxFromGeometry, getBoundsForCells, getBoundsForGroup, getCellBounds, getCellBounds, getCellBounds, getCellBounds, getCellContainmentArea, getCellGeometry, getCellsBeyond, getCellsForGroup, getCellStyle, getCellValidationError, getChangesRepaintThreshold, getChildCells, getChildCells, getChildEdges, getChildOffsetForCell, getChildVertices, getCloneableCells, getConnectionConstraint, getConnectionPoint, getConnections, getConnections, getConnections, getCurrentRoot, getDefaultLoopStyle, getDefaultOverlap, getDefaultParent, getDeletableCells, getDropTarget, getEdges, getEdges, getEdges, getEdges, getEdgesBetween, getEdgesBetween, getEdgeValidationError, getFoldableCells, getGraphBounds, getGridSize, getImage, getImageBundles, getImageBundles, getImageFromBundles, getIncomingEdges, getIncomingEdges, getLabel, getLinkForCell, getMaximumGraphBounds, getMinimumGraphSize, getModel, getMovableCells, getMultiplicities, getOpposites, getOpposites, getOrigin, getOutgoingEdges, getOutgoingEdges, getOverlap, getPaintBounds, getPreferredSizeForCell, getSelectionCell, getSelectionCells, getSelectionCellsForChanges, getSelectionCount, getSelectionModel, getStartSize, getStylesheet, getTargetForCell, getTerminalForPort, getTranslateForRoot, getView, graphModelChanged, groupCells, groupCells, groupCells, groupCells, home, insertEdge, insertEdge, insertVertex, insertVertex, insertVertex, isAllowDanglingEdges, isAllowLoops, isAllowNegativeCoordinates, isAllowOverlapParent, isAutoOrigin, isAutoSizeCell, isAutoSizeCells, isCellBendable, isCellCloneable, isCellCollapsed, isCellConnectable, isCellDeletable, isCellDisconnectable, isCellEditable, isCellFoldable, isCellLocked, isCellMovable, isCellResizable, isCellsBendable, isCellsCloneable, isCellsDeletable, isCellsDisconnectable, isCellsEditable, isCellSelectable, isCellSelected, isCellsLocked, isCellsMovable, isCellsResizable, isCellsSelectable, isCellVisible, isCloneInvalidEdges, isCollapseToPreferredSize, isConnectableEdges, isConstrainChild, isConstrainChildren, isDisconnectOnMove, isDropEnabled, isEdgeLabelsMovable, isEdgeValid, isEnabled, isExtendParent, isExtendParents, isExtendParentsOnAdd, isGridEnabled, isHtmlLabel, isHtmlLabels, isKeepEdgesInBackground, isKeepEdgesInForeground, isLabelClipped, isLabelMovable, isLabelsClipped, isLabelsVisible, isLoop, isMultigraph, isOrthogonal, isPort, isPortsEnabled, isResetEdgesOnConnect, isResetEdgesOnMove, isResetEdgesOnResize, isResetViewOnRootChange, isSelectionEmpty, isSplitEnabled, isSplitTarget, isSwimlane, isSwimlaneNesting, isTerminalPointMovable, isValidAncestor, isValidConnection, isValidDropTarget, isValidRoot, isValidSource, isValidTarget, isVertexLabelsMovable, main, moveCells, moveCells, moveCells, orderCells, orderCells, postProcessCellStyle, processChange, processChanges, refresh, removeCells, removeCells, removeCells, removeCellsFromParent, removeCellsFromParent, removeImageBundle, removePropertyChangeListener, removePropertyChangeListener, removeSelectionCell, removeSelectionCells, removeStateForCell, repaint, repaint, resetEdge, resetEdges, resizeCell, resizeCells, selectAll, selectAll, selectCell, selectCells, selectCells, selectChildCell, selectEdges, selectEdges, selectNextCell, selectParentCell, selectPreviousCell, selectVertices, selectVertices, setAllowDanglingEdges, setAllowLoops, setAllowNegativeCoordinates, setAlternateEdgeStyle, setAutoOrigin, setAutoSizeCells, setBorder, setCellsBendable, setCellsCloneable, setCellsDeletable, setCellsDisconnectable, setCellsEditable, setCellsLocked, setCellsMovable, setCellsResizable, setCellsSelectable, setCellStyle, setCellStyle, setCellStyleFlags, setCellStyleFlags, setCellStyles, setCellStyles, setChangesRepaintThreshold, setCloneInvalidEdges, setCollapseToPreferredSize, setConnectableEdges, setConnectionConstraint, setConstrainChildren, setDefaultLoopStyle, setDefaultOverlap, setDefaultParent, setDisconnectOnMove, setDropEnabled, setEdgeLabelsMovable, setEnabled, setExtendParents, setExtendParentsOnAdd, setGridEnabled, setGridSize, setHtmlLabels, setKeepEdgesInBackground, setKeepEdgesInForeground, setLabelsClipped, setLabelsVisible, setMaximumGraphBounds, setMinimumGraphSize, setModel, setMultigraph, setMultiplicities, setOrigin, setPortsEnabled, setResetEdgesOnConnect, setResetEdgesOnMove, setResetEdgesOnResize, setResetViewOnRootChange, setSelectionCell, setSelectionCells, setSelectionCells, setSplitEnabled, setStylesheet, setSwimlaneNesting, setVertexLabelsMovable, setView, snap, splitEdge, splitEdge, splitEdge, swapBounds, toggleCells, toggleCells, toggleCells, toggleCellStyle, toggleCellStyleFlags, toggleCellStyleFlags, toggleCellStyles, toggleCellStyles, toString, translateCell, traverse, traverse, ungroupCells, ungroupCells, updateAlternateBounds, updateCellSize, updateCellSize, updateGroupBounds, updateGroupBounds, updateGroupBounds, updateGroupBounds, updateOrigin, updateSelection, validateCell, validateEdge

    Methods inherited from class com.mxgraph.util.mxEventSource

    addListener, fireEvent, fireEvent, getEventSource, isEventsEnabled, removeListener, removeListener, setEventsEnabled, setEventSource

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    Methods inherited from interface org.jgrapht.event.GraphListener

    edgeWeightUpdated