Package sc.fiji.snt.viewer.geditor

Class TreeGraphAdapter

java.lang.Object
com.mxgraph.util.mxEventSource
com.mxgraph.view.mxGraph
org.jgrapht.ext.JGraphXAdapter<SWCPoint,SWCWeightedEdge>
sc.fiji.snt.viewer.geditor.SNTGraphAdapter<SWCPoint,SWCWeightedEdge>
sc.fiji.snt.viewer.geditor.TreeGraphAdapter
All Implemented Interfaces:
EventListener, org.jgrapht.event.GraphListener<SWCPoint,SWCWeightedEdge>, org.jgrapht.event.VertexSetListener<SWCPoint>
public class TreeGraphAdapter extends SNTGraphAdapter<SWCPoint,SWCWeightedEdge>
JGraphX adapter for visualizing tree graphs as SWC morphologies. Specializes styling and layout for neurite reconstructions with SWC point vertices and weighted edges.

  • Nested Class Summary

    Nested classes/interfaces inherited from class com.mxgraph.view.mxGraph

    com.mxgraph.view.mxGraph.mxICellVisitor

    Nested classes/interfaces inherited from class com.mxgraph.util.mxEventSource

    com.mxgraph.util.mxEventSource.mxIEventListener

  • Field Summary

    Fields inherited from class sc.fiji.snt.viewer.geditor.SNTGraphAdapter

    cGraph

    Fields inherited from class com.mxgraph.view.mxGraph

    allowDanglingEdges, allowLoops, allowNegativeCoordinates, alternateEdgeStyle, autoOrigin, autoSizeCells, border, cellsBendable, cellsCloneable, cellsDeletable, cellsDisconnectable, cellsEditable, cellsLocked, cellsMovable, cellsResizable, cellsSelectable, changesRepaintThreshold, changeSupport, cloneInvalidEdges, collapseToPreferredSize, connectableEdges, constrainChildren, defaultLoopStyle, defaultOverlap, defaultParent, disconnectOnMove, dropEnabled, edgeLabelsMovable, enabled, extendParents, extendParentsOnAdd, fullRepaintHandler, graphModelChangeHandler, gridEnabled, gridSize, htmlLabels, imageBundles, keepEdgesInBackground, keepEdgesInForeground, labelsClipped, labelsVisible, maximumGraphBounds, minimumGraphSize, model, multigraph, multiplicities, origin, portsEnabled, resetEdgesOnConnect, resetEdgesOnMove, resetEdgesOnResize, resetViewOnRootChange, selectionModel, splitEnabled, stylesheet, swimlaneNesting, updateOriginHandler, VERSION, vertexLabelsMovable, view

    Fields inherited from class com.mxgraph.util.mxEventSource

    eventListeners, eventsEnabled, eventSource

  • Constructor Summary

    Constructors
    Modifier
    Constructor
    Description
     
    TreeGraphAdapter(DirectedWeightedGraph graph)
     
    protected
    TreeGraphAdapter(DirectedWeightedGraph graph, String verticesColor)
     

  • Method Summary

    Modifier and Type
    Method
    Description
    String
    convertValueToString(Object cell)
     
    String
    getToolTipForCell(Object cell)
     
    void
    setEdgeColor(SWCWeightedEdge edge, org.scijava.util.ColorRGB color)
     
    void
    setVertexColor(SWCPoint vertex, org.scijava.util.ColorRGB color)
     

    Methods inherited from class sc.fiji.snt.viewer.geditor.SNTGraphAdapter

    cellLabelChanged, getOriginalValueOfmxCell, getSourceGraph, isEdgeLabelsEnabled, isVertexLabelsEnabled, scaleEdgeWidths, setCellColorsFromGraph, setEnableEdgeLabels, setEnableVertexLabels

    Methods inherited from class org.jgrapht.ext.JGraphXAdapter

    edgeAdded, edgeRemoved, getCellToEdgeMap, getCellToVertexMap, getEdgeToCellMap, getVertexToCellMap, vertexAdded, vertexRemoved

    Methods inherited from class com.mxgraph.view.mxGraph

    addAllEdges, addCell, addCell, addCell, addCells, addCells, addCells, addCells, addEdge, addImageBundle, addPropertyChangeListener, addPropertyChangeListener, addSelectionCell, addSelectionCells, addTopmostVerticesAndEdges, alignCells, alignCells, alignCells, cellConnected, cellDrawn, cellsAdded, cellsAdded, cellsFolded, cellsFolded, cellSizeUpdated, cellsMoved, cellsOrdered, cellsRemoved, cellsResized, cellsToggled, clearSelection, cloneCells, cloneCells, connectCell, connectCell, constrainChild, createEdge, createGraphView, createGroupCell, createSelectionModel, createStylesheet, createVertex, createVertex, disconnectGraph, drawCell, drawGraph, drawState, enterGroup, enterGroup, exitGroup, extendParent, findTreeRoots, findTreeRoots, findTreeRoots, flipEdge, foldCells, foldCells, foldCells, foldCells, getAllConnectionConstraints, getAllEdges, getAlternateEdgeStyle, getBorder, getBoundingBox, getBoundingBox, getBoundingBox, getBoundingBoxFromGeometry, getBoundsForCells, getBoundsForGroup, getCellBounds, getCellBounds, getCellBounds, getCellBounds, getCellContainmentArea, getCellGeometry, getCellsBeyond, getCellsForGroup, getCellStyle, getCellValidationError, getChangesRepaintThreshold, getChildCells, getChildCells, getChildEdges, getChildOffsetForCell, getChildVertices, getCloneableCells, getConnectionConstraint, getConnectionPoint, getConnections, getConnections, getConnections, getCurrentRoot, getDefaultLoopStyle, getDefaultOverlap, getDefaultParent, getDeletableCells, getDropTarget, getEdges, getEdges, getEdges, getEdges, getEdgesBetween, getEdgesBetween, getEdgeValidationError, getFoldableCells, getGraphBounds, getGridSize, getImage, getImageBundles, getImageBundles, getImageFromBundles, getIncomingEdges, getIncomingEdges, getLabel, getLinkForCell, getMaximumGraphBounds, getMinimumGraphSize, getModel, getMovableCells, getMultiplicities, getOpposites, getOpposites, getOrigin, getOutgoingEdges, getOutgoingEdges, getOverlap, getPaintBounds, getPreferredSizeForCell, getSelectionCell, getSelectionCells, getSelectionCellsForChanges, getSelectionCount, getSelectionModel, getStartSize, getStylesheet, getTargetForCell, getTerminalForPort, getTranslateForRoot, getView, graphModelChanged, groupCells, groupCells, groupCells, groupCells, home, insertEdge, insertEdge, insertVertex, insertVertex, insertVertex, isAllowDanglingEdges, isAllowLoops, isAllowNegativeCoordinates, isAllowOverlapParent, isAutoOrigin, isAutoSizeCell, isAutoSizeCells, isCellBendable, isCellCloneable, isCellCollapsed, isCellConnectable, isCellDeletable, isCellDisconnectable, isCellEditable, isCellFoldable, isCellLocked, isCellMovable, isCellResizable, isCellsBendable, isCellsCloneable, isCellsDeletable, isCellsDisconnectable, isCellsEditable, isCellSelectable, isCellSelected, isCellsLocked, isCellsMovable, isCellsResizable, isCellsSelectable, isCellVisible, isCloneInvalidEdges, isCollapseToPreferredSize, isConnectableEdges, isConstrainChild, isConstrainChildren, isDisconnectOnMove, isDropEnabled, isEdgeLabelsMovable, isEdgeValid, isEnabled, isExtendParent, isExtendParents, isExtendParentsOnAdd, isGridEnabled, isHtmlLabel, isHtmlLabels, isKeepEdgesInBackground, isKeepEdgesInForeground, isLabelClipped, isLabelMovable, isLabelsClipped, isLabelsVisible, isLoop, isMultigraph, isOrthogonal, isPort, isPortsEnabled, isResetEdgesOnConnect, isResetEdgesOnMove, isResetEdgesOnResize, isResetViewOnRootChange, isSelectionEmpty, isSplitEnabled, isSplitTarget, isSwimlane, isSwimlaneNesting, isTerminalPointMovable, isValidAncestor, isValidConnection, isValidDropTarget, isValidRoot, isValidSource, isValidTarget, isVertexLabelsMovable, main, moveCells, moveCells, moveCells, orderCells, orderCells, postProcessCellStyle, processChange, processChanges, refresh, removeCells, removeCells, removeCells, removeCellsFromParent, removeCellsFromParent, removeImageBundle, removePropertyChangeListener, removePropertyChangeListener, removeSelectionCell, removeSelectionCells, removeStateForCell, repaint, repaint, resetEdge, resetEdges, resizeCell, resizeCells, selectAll, selectAll, selectCell, selectCells, selectCells, selectChildCell, selectEdges, selectEdges, selectNextCell, selectParentCell, selectPreviousCell, selectVertices, selectVertices, setAllowDanglingEdges, setAllowLoops, setAllowNegativeCoordinates, setAlternateEdgeStyle, setAutoOrigin, setAutoSizeCells, setBorder, setCellsBendable, setCellsCloneable, setCellsDeletable, setCellsDisconnectable, setCellsEditable, setCellsLocked, setCellsMovable, setCellsResizable, setCellsSelectable, setCellStyle, setCellStyle, setCellStyleFlags, setCellStyleFlags, setCellStyles, setCellStyles, setChangesRepaintThreshold, setCloneInvalidEdges, setCollapseToPreferredSize, setConnectableEdges, setConnectionConstraint, setConstrainChildren, setDefaultLoopStyle, setDefaultOverlap, setDefaultParent, setDisconnectOnMove, setDropEnabled, setEdgeLabelsMovable, setEnabled, setExtendParents, setExtendParentsOnAdd, setGridEnabled, setGridSize, setHtmlLabels, setKeepEdgesInBackground, setKeepEdgesInForeground, setLabelsClipped, setLabelsVisible, setMaximumGraphBounds, setMinimumGraphSize, setModel, setMultigraph, setMultiplicities, setOrigin, setPortsEnabled, setResetEdgesOnConnect, setResetEdgesOnMove, setResetEdgesOnResize, setResetViewOnRootChange, setSelectionCell, setSelectionCells, setSelectionCells, setSplitEnabled, setStylesheet, setSwimlaneNesting, setVertexLabelsMovable, setView, snap, splitEdge, splitEdge, splitEdge, swapBounds, toggleCells, toggleCells, toggleCells, toggleCellStyle, toggleCellStyleFlags, toggleCellStyleFlags, toggleCellStyles, toggleCellStyles, toString, translateCell, traverse, traverse, ungroupCells, ungroupCells, updateAlternateBounds, updateCellSize, updateCellSize, updateGroupBounds, updateGroupBounds, updateGroupBounds, updateGroupBounds, updateOrigin, updateSelection, validateCell, validateEdge

    Methods inherited from class com.mxgraph.util.mxEventSource

    addListener, fireEvent, fireEvent, getEventSource, isEventsEnabled, removeListener, removeListener, setEventsEnabled, setEventSource

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    Methods inherited from interface org.jgrapht.event.GraphListener

    edgeWeightUpdated