Package sc.fiji.snt.io

Class NDFImporter

java.lang.Object

sc.fiji.snt.io.NDFImporter

public class NDFImporter
extends Object

Importer for NeuronJ data files.

Author:

Tiago Ferreira

Constructor Summary

Constructors

Constructor	Description
NDFImporter(File file)
NDFImporter(InputStream is)
NDFImporter(String filePath)

Method Summary

Modifier and Type	Method	Description
Map<String,String>	getProperties()
ij.gui.Overlay	getROIs()	Converts tracings into ROIs
Collection<Tree>	getTrees()	Extracts tracings from the specified file path
static void	main(String... args)
static String	supportedVersion()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NDFImporter

public NDFImporter(InputStream is)

Parameters:

is - the InputStream of ndf data

NDFImporter

public NDFImporter(String filePath)

Parameters:

filePath - the path to the ndf file to be imported

NDFImporter

public NDFImporter(File file)

Parameters:

file - the ndf file to be imported

Method Details

getTrees

public Collection<Tree> getTrees()
                          throws IOException

Extracts tracings from the specified file path

Returns:

the collection of imported trees

Throws:

IOException - if file could not be parsed

getROIs

public ij.gui.Overlay getROIs()
                       throws IOException

Converts tracings into ROIs

Returns:

the Overlay containing the converted tracings

Throws:

IOException - if file could not be parsed

getProperties

public Map<String,String> getProperties()

Returns:

the properties ('NDF metadata') of the parsed file

supportedVersion

public static String supportedVersion()

Returns:

the last known version of NeuronJ known to work this importer

main

public static void main(String... args)
                 throws IOException

Throws:

IOException