Package sc.fiji.snt.io

package sc.fiji.snt.io

Classes for importing reconstructions into SNT. Note that (for historic reasons) basic I/O functionality is handled by PathAndFillManager.

Author:

Tiago Ferreira

Related Packages

Package	Description
sc.fiji.snt	SNT core classes

Class	Description
FlyCircuitLoader	Absurdly simple importer for retrieving SWC data from FlyCircuit.
InsectBrainLoader	Methods for retrieving reconstructions and annotations from the Insect Brain Database at insectbraindb.org *
InsectBrainLoader.NeuronInfo
MouseLightLoader	Methods for retrieving reconstructions from MouseLight's online database at ml-neuronbrowser.janelia.org *
MouseLightQuerier	Importer for retrieving reconstructions from MouseLight's online database at ml-neuronbrowser.janelia.org
NDFImporter	Importer for NeuronJ data files.
NeurolucidaImporter	Importer for Neurolucida XML files (Neuromorphological File Specification / NMF format).
NeuroMorphoLoader	Importer for retrieving SWC data from neuromorpho.org.
OmeAxisUtils	Utility for setting ImgPlus axes from OME metadata (OME-XML or OME-Zarr).
OmeAxisUtils.OmeMetadata	Parsed OME metadata container.
RemoteSWCLoader	Importers downloading remote SWC files should extend this interface.
SpimDataUtils	Utilities for working with AbstractSpimData and BigDataViewer XML descriptors.
SpimDataUtils.CalibratedSource<T extends net.imglib2.type.numeric.NumericType<T>>	Wraps a RandomAccessibleIntervalSource and overrides SpimDataUtils.CalibratedSource.getVoxelDimensions() to carry the physical unit (e.g.
SpimDataUtils.N5Sources	Holds the sources produced by opening an N5 or OME-Zarr container via n5-ij/n5-universe/n5-viewer_fiji (see SpimDataUtils.resolvePathToSource(String)).
SWCExportException	Exception thrown when an error occurs during SWC file export operations.
TracesFileFormatException	Exception thrown when an error occurs while parsing or validating traces file formats.
WekaModelLoader	GUI command for Loading pre-trained models from Labkit/TWS as secondary image layer.