Uses of Class
sc.fiji.snt.analysis.detection.Detection

Packages that use Detection

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.detection	Feature detectors for traced paths.

Uses of Detection in sc.fiji.snt.analysis

Subclasses of Detection in sc.fiji.snt.analysis

Modifier and Type	Class	Description
static final class	PeripathDetector.Detection	Deprecated. Use Detection instead.

Methods in sc.fiji.snt.analysis that return types with arguments of type Detection

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T>> List<Detection>	PeripathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, PeripathDetector.Config cfg)	Deprecated. Use PeripathDetector.detect(java.util.Collection<sc.fiji.snt.Path>, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>>, sc.fiji.snt.analysis.detection.PeripathDetector.Config) instead.

Method parameters in sc.fiji.snt.analysis with type arguments of type Detection

Modifier and Type	Method	Description
static ij.gui.PointRoi	RoiConverter.toPointRoi(List<Detection> detections, ij.ImagePlus imp, String name, Color color)	Creates a grouped PointRoi from a list of Detections.

Uses of Detection in sc.fiji.snt.analysis.detection

Methods in sc.fiji.snt.analysis.detection that return types with arguments of type Detection

Modifier and Type	Method	Description
static List<Detection>	DetectorUtils.assignToNearestPaths(List<Detection> detections, Collection<Path> allPaths)	Reassigns each detection to the nearest path (by minimum node distance).
static List<Detection>	DetectorUtils.deduplicate(List<Detection> detections, double mergingDistance)	Deduplicates detections using greedy non-maximum suppression by intensity.
static <T extends net.imglib2.type.numeric.RealType<T>> List<Detection>	AlongPathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, AlongPathDetector.Config cfg)	Detects swellings (boutons/varicosities) along the given paths by analyzing the longitudinal radius profile and, optionally, on-skeleton image intensity.
static List<Detection>	AlongPathDetector.detect(Collection<Path> paths, AlongPathDetector.Config cfg)	Convenience overload that performs radius-only detection (no image).
static List<Detection>	LabelProximityDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> labelImg, LabelProximityDetector.Config config)	Detects proximity contacts between paths and labeled surfaces.
static <T extends net.imglib2.type.numeric.RealType<T>> List<Detection>	PeripathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, PeripathDetector.Config cfg)	Detects intensity maxima along the given paths.

Method parameters in sc.fiji.snt.analysis.detection with type arguments of type Detection

Modifier and Type	Method	Description
static List<Detection>	DetectorUtils.assignToNearestPaths(List<Detection> detections, Collection<Path> allPaths)	Reassigns each detection to the nearest path (by minimum node distance).
static List<Detection>	DetectorUtils.deduplicate(List<Detection> detections, double mergingDistance)	Deduplicates detections using greedy non-maximum suppression by intensity.