Package sc.fiji.snt.analysis.detection

package sc.fiji.snt.analysis.detection

Feature detectors for traced paths. Contains detectors that find morphological features along or around neuronal paths:

• PeripathDetector: Detects intensity maxima in perpendicular cross-sections around paths (spines, synaptic puncta)
• AlongPathDetector: Detects swellings (boutons, varicosities) along paths using longitudinal radius and intensity profiles

Shared utilities are in DetectorUtils and the common result type is Detection.

Related Packages

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.curation	Classes for curation of reconstructions, as implemented by the "Curation Assistant".
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.analysis.growth	Classes for growth analysis of neurites across time
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.

Classes

Class	Description
AlongPathDetector	Detects features (boutons, varicosities) along traced paths by analyzing longitudinal radius and intensity profiles.
AlongPathDetector.Config	Configuration for along-path detection with builder-like setters.
Detection	One detected feature along or around a traced path (varicosity, spine, bouton, punctum, etc.).
DetectorUtils	Shared utilities for path-based detectors (PeripathDetector, AlongPathDetector).
LabelProximityDetector	Detects contact points between traced paths and labeled surfaces (from a segmentation/label image).
LabelProximityDetector.Config	Configuration for LabelProximityDetector.
PeripathDetector	Detects intensity maxima (varicosities, spines, synaptic puncta) in annular cross-sections around traced paths.
PeripathDetector.Config	Immutable configuration with builder-like setters.