Uses of Class
sc.fiji.snt.analysis.detection.PeripathDetector.Config

Packages that use PeripathDetector.Config

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.detection	Feature detectors for traced paths.

Uses of PeripathDetector.Config in sc.fiji.snt.analysis

Subclasses of PeripathDetector.Config in sc.fiji.snt.analysis

Modifier and Type	Class	Description
static final class	PeripathDetector.Config	Deprecated. Use PeripathDetector.Config instead.

Methods in sc.fiji.snt.analysis with parameters of type PeripathDetector.Config

Modifier and Type	Method	Description
static void	PeripathDetector.createTorusMask(Collection<Path> paths, ij.ImagePlus output, PeripathDetector.Config cfg, double fillValue)	Deprecated. Use PeripathDetector.createTorusMask(java.util.Collection<sc.fiji.snt.Path>, net.imglib2.RandomAccessibleInterval<T>, sc.fiji.snt.analysis.detection.PeripathDetector.Config, double) instead.
static <T extends net.imglib2.type.numeric.RealType<T>> void	PeripathDetector.createTorusMask(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<T> output, PeripathDetector.Config cfg, double fillValue)	Deprecated. Use PeripathDetector.createTorusMask(java.util.Collection<sc.fiji.snt.Path>, net.imglib2.RandomAccessibleInterval<T>, sc.fiji.snt.analysis.detection.PeripathDetector.Config, double) instead.
static <T extends net.imglib2.type.numeric.RealType<T>> List<Detection>	PeripathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, PeripathDetector.Config cfg)	Deprecated. Use PeripathDetector.detect(java.util.Collection<sc.fiji.snt.Path>, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>>, sc.fiji.snt.analysis.detection.PeripathDetector.Config) instead.

Uses of PeripathDetector.Config in sc.fiji.snt.analysis.detection

Methods in sc.fiji.snt.analysis.detection that return PeripathDetector.Config

Modifier and Type	Method	Description
PeripathDetector.Config	PeripathDetector.Config.assignToNearestPath(boolean b)
PeripathDetector.Config	PeripathDetector.Config.innerRadius(double v)
PeripathDetector.Config	PeripathDetector.Config.innerRadiusMultiplier(double v)
PeripathDetector.Config	PeripathDetector.Config.maxSectionSize(int v)
PeripathDetector.Config	PeripathDetector.Config.mergingDistance(double v)
PeripathDetector.Config	PeripathDetector.Config.outerRadius(double v)
PeripathDetector.Config	PeripathDetector.Config.outerRadiusMultiplier(double v)
PeripathDetector.Config	PeripathDetector.Config.prominence(double v)

Methods in sc.fiji.snt.analysis.detection with parameters of type PeripathDetector.Config

Modifier and Type	Method	Description
static void	PeripathDetector.createTorusMask(Collection<Path> paths, ij.ImagePlus output, PeripathDetector.Config cfg, double fillValue)	Creates a binary torus mask around the given paths, writing into an ImagePlus.
static <T extends net.imglib2.type.numeric.RealType<T>> void	PeripathDetector.createTorusMask(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<T> output, PeripathDetector.Config cfg, double fillValue)	Creates a binary torus mask around the given paths.
static <T extends net.imglib2.type.numeric.RealType<T>> List<Detection>	PeripathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, PeripathDetector.Config cfg)	Detects intensity maxima along the given paths.