Package sc.fiji.snt.analysis.graph

package sc.fiji.snt.analysis.graph

Classes for handling neuronal reconstructions as graphs

Author:

Tiago Ferreira

Related Packages

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.curation	Classes for curation of reconstructions, as implemented by the "Curation Assistant".
sc.fiji.snt.analysis.detection	Feature detectors for traced paths.
sc.fiji.snt.analysis.growth	Classes for growth analysis of neurites across time
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.

Classes

Class	Description
AnnotationGraph	A specialized graph implementation for brain annotations that extends SNTGraph.
AnnotationGraphUtils	Utilities for AnnotationGraph handling and manipulation.
AnnotationWeightedEdge	Represents a weighted edge between two BrainAnnotation vertices in an annotation graph.
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.
DirectedWeightedSubgraph	Class for accessing the sub-graph that has a subset of vertices and a subset of edges of a DirectedWeightedGraph.
GraphColorMapper<V,E extends org.jgrapht.graph.DefaultWeightedEdge>	A color mapping utility for graph visualization that assigns colors to vertices and edges based on various graph metrics.
GraphUtils	Utilities for Graph handling.
SNTGraph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>	An abstract weighted graph implementation that extends AbstractBaseGraph with additional support for vertex/edge coloring and vertex value mapping.
SNTPseudograph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>	A specialized implementation of SNTGraph that represents a directed pseudograph with weighted edges.
SparseDirectedWeightedGraph	Memory-efficient variant of DirectedWeightedGraph backed by a compressed sparse-row (CSR) adjacency representation (CsrDirectedSpecifics).
SWCWeightedEdge	An extremely simple implementation of a weighted edge for Tree:Directed Graph conversions.