Uses of Package
sc.fiji.snt.analysis.graph

Packages that use sc.fiji.snt.analysis.graph

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.tracing.auto	Automatic neuron tracing algorithms that reconstruct complete neuronal morphologies from images without user interaction.
sc.fiji.snt.tracing.auto.gwdt	Storage backends for the Gray-Weighted Distance Transform (GWDT) tracing algorithm.
sc.fiji.snt.viewer	Visualization of reconstructions
sc.fiji.snt.viewer.geditor	Classes implementing SNT's Graph Viewer

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt

Class	Description
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.
SparseDirectedWeightedGraph	Memory-efficient variant of DirectedWeightedGraph backed by a compressed sparse-row (CSR) adjacency representation (CsrDirectedSpecifics).

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.analysis

Class	Description
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.analysis.graph

Class	Description
AnnotationGraph	A specialized graph implementation for brain annotations that extends SNTGraph.
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.
DirectedWeightedSubgraph	Class for accessing the sub-graph that has a subset of vertices and a subset of edges of a DirectedWeightedGraph.
SNTGraph	An abstract weighted graph implementation that extends AbstractBaseGraph with additional support for vertex/edge coloring and vertex value mapping.
SWCWeightedEdge	An extremely simple implementation of a weighted edge for Tree:Directed Graph conversions.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.annotation

Class	Description
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.
DirectedWeightedSubgraph	Class for accessing the sub-graph that has a subset of vertices and a subset of edges of a DirectedWeightedGraph.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.tracing.auto

Class	Description
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.tracing.auto.gwdt

Class	Description
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.viewer

Class	Description
SNTGraph	An abstract weighted graph implementation that extends AbstractBaseGraph with additional support for vertex/edge coloring and vertex value mapping.

Classes in sc.fiji.snt.analysis.graph used by sc.fiji.snt.viewer.geditor

Class	Description
AnnotationGraph	A specialized graph implementation for brain annotations that extends SNTGraph.
AnnotationWeightedEdge	Represents a weighted edge between two BrainAnnotation vertices in an annotation graph.
DirectedWeightedGraph	Class for accessing a reconstruction as a graph structure.
SNTGraph	An abstract weighted graph implementation that extends AbstractBaseGraph with additional support for vertex/edge coloring and vertex value mapping.
SNTPseudograph	A specialized implementation of SNTGraph that represents a directed pseudograph with weighted edges.
SWCWeightedEdge	An extremely simple implementation of a weighted edge for Tree:Directed Graph conversions.