Package sc.fiji.snt.annotation

package sc.fiji.snt.annotation
Classes handling neuropil annotations and atlases metadata.
Author:
Tiago Ferreira
  • Class
    Description
    AllenCompartment
    Defines an Allen Reference Atlas (ARA) [Allen Mouse Common Coordinate Framework] annotation.
    AllenUtils
    Utility methods for accessing/handling AllenCompartments
    BrainAnnotation
    Classes extending this interface implement a neuropil label/annotation aka "compartment".
    DrosophilaCompartment
    Represents a brain region from the Drosophila Anatomy Ontology (FBbt).
    DrosophilaUtils
    Utility methods for accessing the Drosophila adult brain ontology derived from FBbt (Drosophila Anatomy Ontology).
    InsectBrainCompartment
     
    InsectBrainUtils
    Utility methods for retrieving species, brain, and neuron data from the Insect Brain Database
    VFBUtils
    Utility methods for accessing/handling Virtual Fly Brain (VFB) annotations
    ZBAtlasUtils
    Utility methods for accessing the Max Plank Zebrafish Brain Atlas (ZBA) at fishatlas.neuro.mpg.de.