Package sc.fiji.snt.analysis.sholl.math

package sc.fiji.snt.analysis.sholl.math

Statistical analysis of Sholl data

Author:

Tiago Ferreira

See Also:

• https://github.com/tferr/ASA
• http://imagej.net/Sholl

Related Packages

Package	Description
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.
sc.fiji.snt.analysis.sholl.gui	GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
sc.fiji.snt.analysis.sholl.parsers	Parsers to retrieve Sholl profiles from multiple sources (2D/3D images, reconstructions, and tables)

Class	Description
Comparator	Compares two profiles statistically.
LinearProfileStats	Retrieves descriptive statistics and calculates Sholl Metrics from sampled Sholl profiles, including those relying on polynomial fitting.
NormalizedProfileStats	Calculates Sholl Metrics from normalized profiles, including Sholl decay and methods for determination of 'optimal' normalization.
PolarProfileStats	PolarProfileStats computes angle-resolved (‘Polar Sholl’) metrics from a Sholl Profile, providing analysis and visualization methods for directional patterns in Sholl profiles.
PolarProfileStats.PolarPeak	Simple container for angular peaks.
PolarProfileStats.Report	Immutable summary of the global polar distribution.
ShollStats	Methods and constants common to Profile analyzers.
ShollStats.DataMode