Package sc.fiji.snt.analysis.sholl.math

Interface ShollStats

All Known Implementing Classes:
LinearProfileStats, NormalizedProfileStats, PolarProfileStats
public interface ShollStats
Methods and constants common to Profile analyzers.
Author:
Tiago Ferreira

  • Nested Class Summary

    Nested Classes
    Modifier and Type
    Interface
    Description
    static enum 
    ShollStats.DataMode
     

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    static final int
    ANNULUS
    Flag for annulus normalization (Semi-log/Log-log method)
    static final int
    AREA
    Flag for area normalization (Semi-log/Log-log method)
    static final int
    GUESS_SLOG
    Flag for automatic choice between Semi-log/Log-log analysis
    static final int
    LOG_LOG
    Flag for imposing Log-log analysis
    static final int
    PERIMETER
    Flag for perimeter normalization (Semi-log/Log-log method)
    static final int
    S_SHELL
    Flag for spherical shell normalization (Semi-log/Log-log method)
    static final int
    SEMI_LOG
    Flag for imposing Semi-log analysis
    static final int
    SURFACE
    Flag for surface normalization (Semi-log/Log-log method)
    static final int
    VOLUME
    Flag for volume normalization (Semi-log/Log-log method)

  • Method Summary

    Modifier and Type
    Method
    Description
    ShollStats.DataMode
    getDataMode()
     
    double[]
    getFitYValues()
     
    double[]
    getFitYValues(boolean asCumulativeFrequencies)
     
    int
    getN()
     
    Profile
    getProfile()
     
    double[]
    getXValues()
     
    double[]
    getYValues()
     
    double[]
    getYValues(boolean asCumulativeFrequencies)
     
    void
    setDataMode(ShollStats.DataMode mode)
     
    boolean
    validFit()
     

  • Field Details

    • AREA

      static final int AREA
      Flag for area normalization (Semi-log/Log-log method)
      See Also:

    • PERIMETER

      static final int PERIMETER
      Flag for perimeter normalization (Semi-log/Log-log method)
      See Also:

    • ANNULUS

      static final int ANNULUS
      Flag for annulus normalization (Semi-log/Log-log method)
      See Also:

    • VOLUME

      static final int VOLUME
      Flag for volume normalization (Semi-log/Log-log method)
      See Also:

    • SURFACE

      static final int SURFACE
      Flag for surface normalization (Semi-log/Log-log method)
      See Also:

    • S_SHELL

      static final int S_SHELL
      Flag for spherical shell normalization (Semi-log/Log-log method)
      See Also:

    • SEMI_LOG

      static final int SEMI_LOG
      Flag for imposing Semi-log analysis
      See Also:

    • LOG_LOG

      static final int LOG_LOG
      Flag for imposing Log-log analysis
      See Also:

    • GUESS_SLOG

      static final int GUESS_SLOG
      Flag for automatic choice between Semi-log/Log-log analysis
      See Also:

  • Method Details

    • getXValues

      double[] getXValues()

    • getYValues

      double[] getYValues()

    • getYValues

      double[] getYValues(boolean asCumulativeFrequencies)

    • getFitYValues

      double[] getFitYValues()

    • getFitYValues

      double[] getFitYValues(boolean asCumulativeFrequencies)

    • validFit

      boolean validFit()

    • getN

      int getN()

    • getProfile

      Profile getProfile()

    • getDataMode

      ShollStats.DataMode getDataMode()

    • setDataMode

      void setDataMode(ShollStats.DataMode mode)