Package sc.fiji.snt.annotation

Class DrosophilaUtils

java.lang.Object

sc.fiji.snt.annotation.DrosophilaUtils

public final class DrosophilaUtils
extends Object

Utility methods for accessing the Drosophila adult brain ontology derived from FBbt (Drosophila Anatomy Ontology).

Author:

Tiago Ferreira

Field Summary

Fields

Modifier and Type	Field	Description
static final int	BRAIN_ROOT_ID	Root FBbt numeric ID for "adult brain".

Method Summary

Modifier and Type	Method	Description
static Collection<DrosophilaCompartment>	getAllCompartments()	Returns all compartments in the ontology.
static org.json.JSONArray	getBrainAreasList()	Returns the list of brain area entries from the bundled JSON.
static DrosophilaCompartment	getCompartment(int id)	Returns a DrosophilaCompartment for the given FBbt numeric ID.
static DefaultTreeModel	getTreeModel()	Builds a DefaultTreeModel representing the Drosophila adult brain ontology hierarchy.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

BRAIN_ROOT_ID

public static final int BRAIN_ROOT_ID

Root FBbt numeric ID for "adult brain".

See Also:

• Constant Field Values

Method Details

getBrainAreasList

public static org.json.JSONArray getBrainAreasList()

Returns the list of brain area entries from the bundled JSON.

Returns:

the JSON array of brain area objects

getCompartment

public static DrosophilaCompartment getCompartment(int id)

Returns a DrosophilaCompartment for the given FBbt numeric ID.

Parameters:

id - the numeric FBbt ID (e.g., 3624 for "adult brain")

Returns:

the compartment, or null if not found

getAllCompartments

public static Collection<DrosophilaCompartment> getAllCompartments()

Returns all compartments in the ontology.

Returns:

an unmodifiable collection of all compartments

getTreeModel

public static DefaultTreeModel getTreeModel()

Builds a DefaultTreeModel representing the Drosophila adult brain ontology hierarchy.

Returns:

the tree model