Constant Field Values
Contents
sc.fiji.*
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sc.fiji.snt.FillManagerUIModifier and TypeConstant FieldValue
protected static final String"https://imagej.net/plugins/snt/walkthroughs#filling" -
sc.fiji.snt.PathModifier and TypeConstant FieldValue
protected static final int2protected static final int2public static final int4public static final String"apical dendrite"public static final int2public static final String"axon"public static final int5public static final String"custom"public static final int8public static final String"custom (2)"public static final int3public static final String"(basal) dendrite"public static final int-6public static final int-5public static final int7public static final String"glia process"public static final int1public static final String"soma"public static final int0public static final String"undefined"public static final int6public static final String"unspecified neurite" -
sc.fiji.snt.PathAndFillManagerModifier and TypeConstant FieldValue
protected static final int1protected static final int4protected static final int5protected static final int6protected static final int3protected static final int2 -
sc.fiji.snt.PathFitterModifier and TypeConstant FieldValue
public static final int16public static final int32public static final int8public static final int2public static final int1public static final int4 -
sc.fiji.snt.PathManagerUI
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sc.fiji.snt.PathNodeCanvasModifier and TypeConstant FieldValue
public static final int2public static final int5public static final int3public static final int4public static final int0public static final int1public static final int1 -
sc.fiji.snt.SNTModifier and TypeConstant FieldValue
protected static final int5protected static final int2protected static final int3protected static final int1protected static final int40protected static final int10protected static final int2protected static final int0protected static final String"Start point"protected static final String"Target point" -
sc.fiji.snt.SNTPrefsModifier and TypeConstant FieldValue
public static final String"tracespath"public static final String"bvv.maxRenderMillis"public static final String"bvv.maxStepInVoxels"public static final String"bvv.renderHeight"public static final String"bvv.renderWidth"public static final String"noImgData"public static final String"resizeNeeded"public static final String"restoreLoadedImgs"public static final String"splitfills" -
sc.fiji.snt.SNTUIModifier and TypeConstant FieldValue
public static final int15public static final int14public static final int13public static final int0public static final int4public static final int16public static final int17public static final int9 -
sc.fiji.snt.SNTUtilsModifier and TypeConstant FieldValue
public static final String"(.+?)_D(\\d{4}-\\d{2}-\\d{2})T(\\d{2}-\\d{2}-\\d{2})" -
sc.fiji.snt.Tree
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sc.fiji.snt.TreePropertiesModifier and TypeConstant FieldValue
public static final String"axonal"public static final String"dendritic"public static final String"color"public static final String"compartment"public static final String"frame"public static final String"id"public static final String"img"public static final String"channel"public static final String"frame"public static final String"label"public static final String"source"public static final String"unit"public static final String"somatic"public static final String"?"
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sc.fiji.snt.analysis.ConvexHullAnalyzerModifier and TypeConstant FieldValue
public static final String"Boundary size"public static final String"Boxivity"public static final String"Compactness"public static final String"Eccentricity"public static final String"Elongation"public static final String"Roundness"public static final String"Size" -
sc.fiji.snt.analysis.MultiTreeColorMapperModifier and TypeConstant FieldValue
public static final String"Assigned value"public static final String"Cable length"public static final String"Highest path order"public static final String"Cell/id"public static final String"No. of branches"public static final String"No. of tips"public static final String"Horton-Strahler root number" -
sc.fiji.snt.analysis.MultiTreeStatisticsModifier and TypeConstant FieldValue
public static final String"Assigned value"public static final String"Average branch length"public static final String"Average contraction"public static final String"Average fractal dimension"public static final String"Average fragmentation"public static final String"Average partition asymmetry"public static final String"Average remote bif. angle"public static final String"Highest path order"public static final String"Length of inner branches (sum)"public static final String"Mean radius"public static final String"Length of primary branches (sum)"public static final String"Length of terminal branches (sum)" -
sc.fiji.snt.analysis.NodeColorMapperModifier and TypeConstant FieldValue
public static final String"Branch length"public static final String"Branch order"public static final String"Nearest neighbor distance"public static final String"Node radius"public static final String"Node intensity values"public static final String"X coordinates"public static final String"Y coordinates"public static final String"Z coordinates" -
sc.fiji.snt.analysis.NodeStatistics<T>Modifier and TypeConstant FieldValue
public static final String"Branch length"public static final String"Branch order"public static final String"Nearest neighbor distance"public static final String"Node radius"public static final String"Node intensity values"public static final String"X coordinates"public static final String"Y coordinates"public static final String"Z coordinates" -
sc.fiji.snt.analysis.PathProfilerModifier and TypeConstant FieldValue
protected static final String"Circle (hollow)"protected static final String"Circle (hollow, in orthogonal plane)"protected static final String"Disk (filled)"protected static final String"Disk (filled, in orthogonal plane)"protected static final String"Line (orthoghonal)"protected static final String"2D Line (orthoghonal, in node\'s plane)"protected static final String"None. Path centerline only"protected static final String"Sphere (filled)"public static final String"x-values"public static final String"y-values" -
sc.fiji.snt.analysis.PathStatistics
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sc.fiji.snt.analysis.PersistenceAnalyzerModifier and TypeConstant FieldValue
protected static final int0protected static final int1protected static final int2protected static final int3protected static final int4protected static final int5protected static final int6protected static final int-1 -
sc.fiji.snt.analysis.RoiConverter
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sc.fiji.snt.analysis.RootAngleAnalyzer
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sc.fiji.snt.analysis.ShollAnalyzerModifier and TypeConstant FieldValue
public static final String"Decay"public static final String"Max"public static final String"Max (fitted)"public static final String"Max (fitted) radius"public static final String"Mean"public static final String"No. maxima"public static final String"No. secondary maxima"public static final String"Degree of Polynomial fit"public static final String"Ramification index"public static final String"Sum" -
sc.fiji.snt.analysis.TreeColorMapperModifier and TypeConstant FieldValue
public static final String"Internode angle"public static final String"Internode distance"public static final String"No. of branch points"public static final String"No. of nodes"public static final String"No. of spines/varicosities"public static final String"Node radius"public static final String"Path spine/varicosity density"public static final String"Path distance to soma"public static final String"Path extension angle"public static final String"Path extension angle (Rel.)"public static final String"Path extension angle XY"public static final String"Path extension angle XZ"public static final String"Path extension angle ZY"public static final String"Path frame"public static final String"Path length"public static final String"Path mean radius"public static final String"Path order"public static final String"Sholl inters. (root centered)"public static final String"Horton-Strahler orders"public static final String"Tags/filename"public static final String"Node intensity values"public static final String"X coordinates"public static final String"Y coordinates"public static final String"Z coordinates" -
sc.fiji.snt.analysis.TreeStatisticsModifier and TypeConstant FieldValue
public static final String"Average spine/varicosity density"public static final String"Branch contraction"public static final String"Branch extension angle"public static final String"Branch extension angle (Rel.)"public static final String"Branch extension angle XY"public static final String"Branch extension angle XZ"public static final String"Branch extension angle ZY"public static final String"Branch fractal dimension"public static final String"Branch length"public static final String"Branch mean radius"public static final String"Branch surface area"public static final String"Branch volume"public static final String"Complexity index: ACI"public static final String"Complexity index: DCI"public static final String"Contraction"public static final String"Convex hull: Boundary size"public static final String"Convex hull: Boxivity"public static final String"Convex hull: Centroid-root distance"public static final String"Convex hull: Compactness"public static final String"Convex hull: Eccentricity"public static final String"Convex hull: Elongation"public static final String"Convex hull: Roundness"public static final String"Convex hull: Size"public static final String"Depth"public static final String"Fractal dimension"public static final String"Longest shortest path: Length"public static final String"Longest shortest path: Extension angle"public static final String"Longest shortest path: Extension angle XY"public static final String"Longest shortest path: Extension angle XZ"public static final String"Longest shortest path: Extension angle ZY"public static final String"Height"public static final String"Inner branches: Extension angle"public static final String"Inner branches: Extension angle (Rel.)"public static final String"Inner branches: Extension angle XY"public static final String"Inner branches: Extension angle XZ"public static final String"Inner branches: Extension angle ZY"public static final String"Inner branches: Length"public static final String"Internode angle"public static final String"Internode distance"public static final String"Internode distance (squared)"public static final String"Cable length"public static final String"Path mean radius"public static final String"No. of branch nodes (branch fragmentation)"public static final String"No. of branch points"public static final String"No. of branches"public static final String"No. of fitted paths"public static final String"No. of inner branches"public static final String"No. of nodes"public static final String"No. of path nodes (path fragmentation)"public static final String"No. of paths"public static final String"No. of primary branches"public static final String"No. of spines/varicosities"public static final String"No. of terminal branches"public static final String"No. of tips"public static final String"Node radius"public static final String"Partition asymmetry"public static final String"Path channel"public static final String"Path contraction"public static final String"Path extension angle"public static final String"Path extension angle (Rel.)"public static final String"Path extension angle XY"public static final String"Path extension angle XZ"public static final String"Path extension angle ZY"public static final String"Path fractal dimension"public static final String"Path frame"public static final String"Path length"public static final String"Path mean radius"public static final String"No. of spines/varicosities per path"public static final String"Path order"public static final String"Path spine/varicosity density"public static final String"Path surface area"public static final String"Path volume"public static final String"Primary branches: Extension angle"public static final String"Primary branches: Extension angle XY"public static final String"Primary branches: Extension angle XZ"public static final String"Primary branches: Extension angle ZY"public static final String"Primary branches: Length"public static final String"Remote bif. angles"public static final String"Root angles: Balancing factor"public static final String"Root angles: Centripetal bias"public static final String"Root angles: Mean direction"public static final String"Sholl: Decay"public static final String"Sholl: Kurtosis"public static final String"Sholl: Max (fitted)"public static final String"Sholl: Max (fitted) radius"public static final String"Sholl: Max"public static final String"Sholl: Mean"public static final String"Sholl: No. maxima"public static final String"Sholl: No. secondary maxima"public static final String"Sholl: Degree of Polynomial fit"public static final String"Sholl: Ramification index"public static final String"Sholl: Skeweness"public static final String"Sholl: Sum"public static final String"Horton-Strahler root number"public static final String"Horton-Strahler bifurcation ratio"public static final String"Surface area"public static final String"Terminal branches: Extension angle"public static final String"Terminal branches: Extension angle (Rel.)"public static final String"Terminal branches: Extension angle XY"public static final String"Terminal branches: Extension angle XZ"public static final String"Terminal branches: Extension angle ZY"public static final String"Terminal branches: Length"public static final String"Node intensity values"public static final String"Volume"public static final String"Width"public static final String"X coordinates"public static final String"Y coordinates"public static final String"Z coordinates"
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sc.fiji.snt.analysis.curation.CurationTags
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sc.fiji.snt.analysis.curation.PlausibilityCalibrator
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sc.fiji.snt.analysis.curation.PlausibilityCheck.SignalQuality
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sc.fiji.snt.analysis.graph.AnnotationGraph
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sc.fiji.snt.analysis.graph.GraphColorMapper<V,
E> Modifier and TypeConstant FieldValuepublic static final String"Betweenness centrality"public static final String"Connected components"public static final String"Eccentricity"public static final String"Edge weight"public static final int2public static final String"Heavy path decomposition"public static final String"In degree"public static final String"Incoming weight"public static final String"Out degree"public static final String"Outgoing weight"public static final String"Page rank"public static final int1public static final int4
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sc.fiji.snt.analysis.growth.GrowthAnalyzerModifier and TypeConstant FieldValue
public static final int3public static final double0.3public static final double5.0public static final int3public static final double0.5public static final double1.5public static final double0.05public static final booleantruepublic static final booleantruepublic static final double0.125public static final String"\\{([Nn]eurite\\s*#\\d+)}"
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sc.fiji.snt.analysis.sholl.ProfilePropertiesModifier and TypeConstant FieldValue
public static final String"east"public static final String"none"public static final String"north"public static final String"south"public static final String"west"public static final String"mean"public static final String"median"public static final String"mode"public static final String"n-dimensions"public static final String"calibration"public static final String"center"public static final String"channel"public static final String"effective.step.size"public static final String"extra-measurement"public static final String"frame"public static final String"hemishells"public static final String"id"public static final String"samples-per-radius"public static final String"samples-integration"public static final String"slice"public static final String"source"public static final String"threshold-range"public static final String"image"public static final String"table"public static final String"tracings"public static final String"?" -
sc.fiji.snt.analysis.sholl.ShollUtils
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sc.fiji.snt.analysis.sholl.gui.ShollOverlay
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sc.fiji.snt.analysis.sholl.gui.ShollPlot
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sc.fiji.snt.analysis.sholl.math.LinearProfileStatsModifier and TypeConstant FieldValue
protected static final doubleUNASSIGNED_VALUE4.9E-324 -
sc.fiji.snt.analysis.sholl.math.NormalizedProfileStatsModifier and TypeConstant FieldValue
protected static final doubleUNASSIGNED_VALUE4.9E-324 -
sc.fiji.snt.analysis.sholl.math.ShollStatsModifier and TypeConstant FieldValue
public static final int8public static final int2public static final int512public static final int256public static final int4public static final int64public static final int128public static final int32public static final int16
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sc.fiji.snt.analysis.sholl.parsers.ImageParser2DModifier and TypeConstant FieldValue
public final int10public static final int0public static final int1public static final int2 -
sc.fiji.snt.analysis.sholl.parsers.TreeParserModifier and TypeConstant FieldValue
public static final int0public static final int1public static final int2public static final int3public static final int4public static final int5public static final int7public static final int6
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sc.fiji.snt.annotation.AllenUtils
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sc.fiji.snt.annotation.BrainAnnotationModifier and TypeConstant FieldValue
public static final char'\u0000'public static final char'l'public static final char'r' -
sc.fiji.snt.annotation.DrosophilaUtils
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sc.fiji.snt.event.SNTEventModifier and TypeConstant FieldValue
public static final int0public static final int1public static final int2
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sc.fiji.snt.gui.FilePickerModifier and TypeConstant FieldValue
public static final int0public static final int1 -
sc.fiji.snt.gui.GuiUtils
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sc.fiji.snt.gui.GuiUtils.JTables.VisitingZoomModifier and TypeConstant FieldValue
public static final int600public static final int3200public static final int25 -
sc.fiji.snt.gui.OntologyBrowser
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sc.fiji.snt.gui.ScriptRecorder
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sc.fiji.snt.gui.SearchFieldModifier and TypeConstant FieldValue
public static final int2public static final int1public static final int8public static final int4
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sc.fiji.snt.gui.cmds.AnnotationGraphRecViewerCmd
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sc.fiji.snt.gui.cmds.CommonDynamicCmd
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sc.fiji.snt.gui.cmds.ImportSeedPointsCmd
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sc.fiji.snt.gui.cmds.MultiSpectralRefinerCmdModifier and TypeConstant FieldValue
public static final String"autoIntensity"public static final String"autoTune"public static final String"backgroundThreshold"public static final String"colorWeight"public static final String"cosSimilarity"public static final String"intensityWeight"public static final String"maxIntensity"public static final String"maxPercentC"public static final String"maxRadius"public static final String"minIntensity"public static final String"minPercentC"public static final String"radiusWeight"public static final String"referenceWindowRadius" -
sc.fiji.snt.gui.cmds.PathFitterCmd
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sc.fiji.snt.hyperpanes.MultiDThreePanesModifier and TypeConstant FieldValue
protected static final String"SNT-MIP-OVERLAY"public static final int0public static final int1public static final int2
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sc.fiji.snt.io.MouseLightLoader
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sc.fiji.snt.io.OmeAxisUtils
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sc.fiji.snt.plugin.AutotraceFromBinarySeedsCmd
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sc.fiji.snt.plugin.AutotraceFromBinaryTipsCmd
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sc.fiji.snt.plugin.AutotraceFromSeedsCmd
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sc.fiji.snt.plugin.AutotraceFromTipsCmd
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sc.fiji.snt.plugin.AutotraceFromWaypointsCmd
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sc.fiji.snt.plugin.BinaryTracerCommonCmdModifier and TypeConstant FieldValue
public static final String"None. Use auto-detection"public static final String"Path(s) branch out from ROI simple centroid"public static final String"Path(s) branch out from ROI weighted centroid"public static final String"ROI marks a single root"public static final String"Path(s) branch out from ROI edge"public static final String"None. Ignore any ROIs" -
sc.fiji.snt.plugin.PathMatcherCmd
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sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd
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sc.fiji.snt.plugin.ShollAnalysisPrefsCmdModifier and TypeConstant FieldValue
public static final int60public static final int2public static final int10public static final booleanfalsepublic static final booleanfalsepublic static final int1public static final booleantruepublic static final booleanfalsepublic static final int30public static final int2public static final String"Medium"public static final double0.7public static final booleantruepublic static final booleantrueprotected static final String"<html><body><div style=\'width:500px\'>"protected static final String"<html><body><div style=\'font-weight:bold;\'>"
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sc.fiji.snt.plugin.ij1.Strahler
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sc.fiji.snt.seed.SeedOverlay
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sc.fiji.snt.seed.SeedPoint
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sc.fiji.snt.seed.SeedTableModelModifier and TypeConstant FieldValue
public static final int3public static final int4public static final int6public static final int7public static final int5public static final int0public static final int1public static final int2public static final String"covered"public static final String"uncovered"public static final String"-"
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sc.fiji.snt.tracing.SearchThreadModifier and TypeConstant FieldValue
public static final int1public static final byte0x4public static final byte0x2public static final byte0x5public static final byte0x3public static final byte0x1public static final int4public static final int3public static final int0public static final int2
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sc.fiji.snt.tracing.auto.AbstractGWDTTracer<T>
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sc.fiji.snt.tracing.auto.AutoTracerModifier and TypeConstant FieldValue
public static final int2public static final int3public static final int4public static final int1public static final int0 -
sc.fiji.snt.tracing.auto.BinaryTracerModifier and TypeConstant FieldValue
public static final int3public static final int2public static final int-3public static final int-2public static final int1public static final int-1 -
sc.fiji.snt.tracing.auto.SomaUtils
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sc.fiji.snt.tracing.cost.DifferenceSq
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sc.fiji.snt.tracing.cost.ReciprocalModifier and TypeConstant FieldValue
public static final double255.0public static final double0.00392156862745098public static final double1.0E-6
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sc.fiji.snt.util.SNTColor
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sc.fiji.snt.viewer.Annotation3DModifier and TypeConstant FieldValue
protected static final int4protected static final int6protected static final int3protected static final int0protected static final int2protected static final int1protected static final int5 -
sc.fiji.snt.viewer.Bvv.KeyframeModifier and TypeConstant FieldValue
public static final int2public static final int1public static final int5public static final int4public static final int3public static final int0 -
sc.fiji.snt.viewer.OBJMeshModifier and TypeConstant FieldValue
public static final int0public static final int1 -
sc.fiji.snt.viewer.Viewer3D