Uses of Package
sc.fiji.snt.tracing.auto
Packages that use sc.fiji.snt.tracing.auto
Package
Description
Scijava-based GUIs for SNT built-in commands.
SNT add-ons as IJ2 commands
Automatic neuron tracing algorithms that reconstruct complete neuronal
morphologies from images without user interaction.
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Classes in sc.fiji.snt.tracing.auto used by sc.fiji.snt.gui.cmdsClassDescriptionDerives
AbstractGWDTTracerconfiguration parameters from one or more example paths. -
Classes in sc.fiji.snt.tracing.auto used by sc.fiji.snt.pluginClassDescriptionAbstract base class for GWDT-based tracers: APP2-style neuron tracer using Gray-Weighted Distance Transform and Fast Marching.Class for generation of
Trees from a skeletonized image. -
Classes in sc.fiji.snt.tracing.auto used by sc.fiji.snt.tracing.autoClassDescriptionAbstract base class for grayscale-based automatic neuron tracers.Abstract base class for GWDT-based tracers: APP2-style neuron tracer using Gray-Weighted Distance Transform and Fast Marching.How the per-waypoint bias amount is derived.Derives
AbstractGWDTTracerconfiguration parameters from one or more example paths.Interface for automatic neuron tracers that reconstruct complete neuronal morphologies from images.Role aSeedPointplays in a tracing run.Disk-backed GWDT tracer for very large images.In-memory GWDT tracer using array storage.Container for soma detection results.Sparse GWDT tracer using hash map storage for memory efficiency.