Hierarchy For All Packages

Package Hierarchies:

• sc.fiji.snt,
• sc.fiji.snt.analysis,
• sc.fiji.snt.analysis.curation,
• sc.fiji.snt.analysis.detection,
• sc.fiji.snt.analysis.graph,
• sc.fiji.snt.analysis.growth,
• sc.fiji.snt.analysis.sholl,
• sc.fiji.snt.analysis.sholl.gui,
• sc.fiji.snt.analysis.sholl.math,
• sc.fiji.snt.analysis.sholl.parsers,
• sc.fiji.snt.annotation,
• sc.fiji.snt.event,
• sc.fiji.snt.filter,
• sc.fiji.snt.gui,
• sc.fiji.snt.gui.cmds,
• sc.fiji.snt.hyperpanes,
• sc.fiji.snt.io,
• sc.fiji.snt.plugin,
• sc.fiji.snt.plugin.ij1,
• sc.fiji.snt.seed,
• sc.fiji.snt.tracing,
• sc.fiji.snt.tracing.artist,
• sc.fiji.snt.tracing.auto,
• sc.fiji.snt.tracing.auto.gwdt,
• sc.fiji.snt.tracing.cost,
• sc.fiji.snt.tracing.heuristic,
• sc.fiji.snt.tracing.image,
• sc.fiji.snt.util,
• sc.fiji.snt.viewer,
• sc.fiji.snt.viewer.geditor

Class Hierarchy

• java.lang.Object
  • sc.fiji.snt.tracing.auto.AbstractAutoTracer (implements sc.fiji.snt.tracing.auto.AutoTracer)
    • sc.fiji.snt.tracing.auto.AbstractGWDTTracer<T>
      • sc.fiji.snt.tracing.auto.DiskBackedGWDTTracer<T>
      • sc.fiji.snt.tracing.auto.GWDTTracer<T>
      • sc.fiji.snt.tracing.auto.SparseGWDTTracer<T>
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • org.scijava.util.SizableArrayList<E> (implements org.scijava.util.Sizable)
          • org.scijava.table.AbstractTable<C,T> (implements org.scijava.table.Table<C,T>)
            • org.scijava.table.DefaultGenericTable (implements org.scijava.table.GenericTable)
              • sc.fiji.snt.analysis.SNTTable
                • sc.fiji.snt.analysis.sholl.gui.ShollTable
  • org.scijava.AbstractContextual (implements org.scijava.Contextual)
    • org.scijava.plugin.AbstractRichPlugin (implements org.scijava.plugin.RichPlugin)
      • org.scijava.service.AbstractService (implements org.scijava.service.Service)
        • sc.fiji.snt.SNTService (implements net.imagej.ImageJService)
    • org.scijava.command.ContextCommand (implements org.scijava.Cancelable, org.scijava.command.Command)
      • sc.fiji.snt.gui.cmds.BvvCmd
      • sc.fiji.snt.analysis.sholl.math.Comparator
      • sc.fiji.snt.gui.cmds.CompareFilesCmd
      • sc.fiji.snt.analysis.ConvexHullAnalyzer
      • sc.fiji.snt.plugin.ConvexHullCmd
      • sc.fiji.snt.gui.cmds.CustomizeAxesCmd
      • sc.fiji.snt.gui.cmds.CustomizeLegendCmd
      • sc.fiji.snt.gui.cmds.CustomizeObjCmd
      • sc.fiji.snt.gui.cmds.CustomizeTreeCmd
      • sc.fiji.snt.analysis.sholl.parsers.ImageParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
        • sc.fiji.snt.analysis.sholl.parsers.ImageParser2D
        • sc.fiji.snt.analysis.sholl.parsers.ImageParser3D
      • sc.fiji.snt.analysis.sholl.math.LinearProfileStats (implements sc.fiji.snt.analysis.sholl.math.ShollStats)
      • sc.fiji.snt.gui.cmds.LoadObjCmd
      • sc.fiji.snt.gui.cmds.MultiSpectralRefinerCmd
      • sc.fiji.snt.gui.cmds.MultiSWCImporterCmd
      • sc.fiji.snt.gui.cmds.mxOrganicLayoutPrefsCmd
      • sc.fiji.snt.gui.cmds.NewGraphOptionsCmd
      • sc.fiji.snt.analysis.sholl.math.NormalizedProfileStats (implements sc.fiji.snt.analysis.sholl.math.ShollStats)
      • sc.fiji.snt.gui.cmds.PathFitterCmd
      • sc.fiji.snt.gui.cmds.PersistenceAnalyzerCmd
      • sc.fiji.snt.gui.cmds.ReconstructionViewerCmd
      • sc.fiji.snt.gui.cmds.RecViewerPrefsCmd
      • sc.fiji.snt.gui.cmds.ShortcutWindowCmd (implements ij.plugin.PlugIn)
      • sc.fiji.snt.gui.cmds.ShowCorrespondencesCmd
      • sc.fiji.snt.plugin.StrahlerCmd
      • sc.fiji.snt.gui.cmds.SWCTypeFilterCmd
      • sc.fiji.snt.gui.cmds.SWCTypeOptionsCmd
      • sc.fiji.snt.analysis.TreeStatistics
        • sc.fiji.snt.analysis.MultiTreeStatistics
        • sc.fiji.snt.plugin.PathOrderAnalysisCmd
        • sc.fiji.snt.analysis.PathStatistics
        • sc.fiji.snt.analysis.TreeAnalyzer
  • sc.fiji.snt.analysis.AbstractConvexHull
    • sc.fiji.snt.analysis.ConvexHull2D
    • sc.fiji.snt.analysis.ConvexHull3D
  • org.jgrapht.graph.AbstractGraph<V,E> (implements org.jgrapht.Graph<V,E>)
    • org.jgrapht.graph.AbstractBaseGraph<V,E> (implements java.lang.Cloneable, org.jgrapht.Graph<V,E>, java.io.Serializable)
      • sc.fiji.snt.analysis.graph.SNTGraph<V,E>
        • sc.fiji.snt.analysis.graph.AnnotationGraph
        • sc.fiji.snt.analysis.graph.DirectedWeightedGraph
          • sc.fiji.snt.analysis.graph.SparseDirectedWeightedGraph
        • sc.fiji.snt.analysis.graph.SNTPseudograph<V,E>
    • org.jgrapht.graph.AsSubgraph<V,E> (implements java.io.Serializable)
      • sc.fiji.snt.analysis.graph.DirectedWeightedSubgraph
  • sc.fiji.snt.tracing.auto.AbstractGWDTTracer.HierarchySegment
  • org.scijava.module.AbstractModule (implements org.scijava.module.Module)
    • org.scijava.module.DefaultMutableModule (implements org.scijava.module.MutableModule)
      • org.scijava.command.DynamicCommand (implements org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual)
        • sc.fiji.snt.gui.cmds.AnnotationGraphRecViewerCmd
        • sc.fiji.snt.gui.cmds.BvvRenderingOptionsCmd
        • sc.fiji.snt.plugin.ChooseDataset
        • sc.fiji.snt.gui.cmds.CommonDynamicCmd
          • sc.fiji.snt.gui.cmds.AlongPathDetectorCmd
          • sc.fiji.snt.plugin.AnalyzerCmd
          • sc.fiji.snt.plugin.AnnotationDensityCmd
          • sc.fiji.snt.gui.cmds.AnnotationGraphGeneratorCmd
          • sc.fiji.snt.gui.cmds.BackupManagerCmd
          • sc.fiji.snt.plugin.BinaryTracerCommonCmd
            • sc.fiji.snt.plugin.AutotraceFromBinarySeedsCmd
            • sc.fiji.snt.plugin.AutotraceFromBinaryTipsCmd
            • sc.fiji.snt.plugin.BinaryTracerCmd
            • sc.fiji.snt.plugin.BinaryTracerFileCmd
          • sc.fiji.snt.plugin.BrainAnnotationCmd
          • sc.fiji.snt.gui.cmds.ChooseDatasetCmd
            • sc.fiji.snt.gui.cmds.LoadSeedsFromLabelsImageCmd
          • sc.fiji.snt.gui.cmds.ColorMapReconstructionCmd
          • sc.fiji.snt.gui.cmds.ComputeSecondaryImg<T,U> (implements org.scijava.command.Interactive, sc.fiji.snt.gui.SigmaPaletteListener)
          • sc.fiji.snt.gui.cmds.CostFunctionSelectionCmd
          • sc.fiji.snt.gui.cmds.DistributionBPCmd
          • sc.fiji.snt.gui.cmds.DistributionCPCmd
          • sc.fiji.snt.gui.cmds.DuplicateCmd
          • sc.fiji.snt.gui.cmds.FigCreatorCmd
          • sc.fiji.snt.gui.cmds.FilterOrTagPathsByAngleCmd
          • sc.fiji.snt.gui.cmds.GraphGeneratorCmd
          • sc.fiji.snt.plugin.GroupAnalyzerCmd
          • sc.fiji.snt.plugin.GrowthAnalyzerCmd
          • sc.fiji.snt.plugin.GWDTTracerCommonCmd
            • sc.fiji.snt.plugin.AutotraceFromSeedsCmd
            • sc.fiji.snt.plugin.AutotraceFromTipsCmd
            • sc.fiji.snt.plugin.AutotraceFromWaypointsCmd
            • sc.fiji.snt.plugin.GWDTMultiSomaCommonCmd
              • sc.fiji.snt.plugin.GWDTMultiSomaCmd (implements org.scijava.command.Interactive)
              • sc.fiji.snt.plugin.GWDTMultiSomaFileCmd
            • sc.fiji.snt.plugin.GWDTTracerCmd (implements org.scijava.command.Interactive)
            • sc.fiji.snt.plugin.GWDTTracerFileCmd
          • sc.fiji.snt.gui.cmds.ImportSeedPointsCmd
          • sc.fiji.snt.gui.cmds.InsectBrainImporterCmd
          • sc.fiji.snt.plugin.InterpolateRadiiCmd
          • sc.fiji.snt.gui.cmds.JSONImporterCmd
          • sc.fiji.snt.gui.cmds.LabelProximityDetectorCmd
          • sc.fiji.snt.plugin.LabkitLoaderCmd
          • sc.fiji.snt.gui.cmds.LoadReconstructionCmd
          • sc.fiji.snt.gui.cmds.LoadSeedsFromROIsCmd
          • sc.fiji.snt.plugin.LocalThicknessCmd
          • sc.fiji.snt.gui.cmds.MLImporterCmd
          • sc.fiji.snt.gui.cmds.NDFImporterCmd
          • sc.fiji.snt.analysis.NodeProfiler
          • sc.fiji.snt.gui.cmds.OpenDatasetCmd
          • sc.fiji.snt.plugin.PathAnalyzerCmd
          • sc.fiji.snt.plugin.PathMatcherCmd
          • sc.fiji.snt.analysis.PathProfiler
          • sc.fiji.snt.plugin.PathSpineAnalysisCmd
          • sc.fiji.snt.plugin.PathTimeAnalysisCmd
          • sc.fiji.snt.gui.cmds.PeripathDetectorCmd
          • sc.fiji.snt.plugin.PlotterCmd (implements org.scijava.command.Interactive)
          • sc.fiji.snt.gui.cmds.RemoteSWCImporterCmd
          • sc.fiji.snt.gui.cmds.RestoreSessionCmd
          • sc.fiji.snt.plugin.RootAngleAnalyzerCmd
          • sc.fiji.snt.gui.cmds.SaveMeasurementsCmd
          • sc.fiji.snt.gui.cmds.SaveSessionCmd
          • sc.fiji.snt.plugin.ShollAnalysisBulkTreeCmd
          • sc.fiji.snt.plugin.ShollAnalysisTreeCmd
            • sc.fiji.snt.plugin.ShollAnalysisTreeInteractiveCmd (implements org.scijava.command.Interactive)
          • sc.fiji.snt.plugin.SomaDetectorCmd
          • sc.fiji.snt.gui.cmds.TranslateReconstructionsCmd (implements org.scijava.command.Interactive)
          • sc.fiji.snt.plugin.TreeMapperCmd
          • sc.fiji.snt.gui.cmds.TwoDHistCmd
          • sc.fiji.snt.io.WekaModelLoader
        • sc.fiji.snt.plugin.GraphAdapterMapperCmd
        • org.scijava.command.InteractiveCommand (implements org.scijava.command.Interactive, org.scijava.log.Logged, org.scijava.command.Previewable)
          • sc.fiji.snt.gui.cmds.AddTextAnnotationCmd
        • sc.fiji.snt.gui.cmds.mxCircleLayoutGroupedCmd
        • org.scijava.options.OptionsPlugin (implements org.scijava.plugin.SingletonPlugin)
          • sc.fiji.snt.gui.cmds.PrefsCmd
          • sc.fiji.snt.plugin.ShollAnalysisPrefsCmd
        • sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd
          • sc.fiji.snt.plugin.ShollAnalysisImgCmd
          • sc.fiji.snt.plugin.ShollAnalysisImgInteractiveCmd (implements org.scijava.command.Interactive)
        • sc.fiji.snt.gui.cmds.SNTLoaderCmd
        • sc.fiji.snt.gui.cmds.TreeGraphRecViewerCmd
  • net.imagej.ops.AbstractOp (implements net.imagej.ops.Op)
    • net.imagej.ops.special.AbstractUnaryOp<I,O> (implements net.imagej.ops.special.UnaryOp<I,O>)
      • net.imagej.ops.special.computer.AbstractUnaryComputerOp<I,O> (implements net.imagej.ops.special.computer.UnaryComputerOp<I,O>)
        • sc.fiji.snt.filter.Frangi<T,U> (implements java.util.function.Consumer<T>, net.imagej.ops.Ops.Filter.FrangiVesselness)
        • sc.fiji.snt.filter.SpectralSimilarity<T,U> (implements java.util.function.Consumer<T>)
        • sc.fiji.snt.filter.Tubeness<T,U> (implements java.util.function.Consumer<T>, net.imagej.ops.Ops.Filter.Tubeness)
  • sc.fiji.snt.tracing.AbstractSearch (implements java.lang.Runnable, sc.fiji.snt.tracing.SearchInterface)
    • sc.fiji.snt.tracing.BiSearch
    • sc.fiji.snt.tracing.SearchThread
      • sc.fiji.snt.tracing.FillerThread
      • sc.fiji.snt.tracing.TracerThread
  • bdv.util.AbstractSource<T> (implements bdv.viewer.Source<T>)
    • bdv.util.RandomAccessibleIntervalSource<T>
      • sc.fiji.snt.io.SpimDataUtils.CalibratedSource<T>
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • sc.fiji.snt.seed.SeedTableModel
  • sc.fiji.snt.annotation.AllenCompartment (implements sc.fiji.snt.annotation.BrainAnnotation)
  • sc.fiji.snt.annotation.AllenUtils
  • sc.fiji.snt.analysis.detection.AlongPathDetector
  • sc.fiji.snt.analysis.detection.AlongPathDetector.Config
  • sc.fiji.snt.analysis.AnalysisUtils
  • sc.fiji.snt.viewer.Annotation3D
  • sc.fiji.snt.analysis.graph.AnnotationGraphUtils
  • sc.fiji.snt.tracing.image.ArraySearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • sc.fiji.snt.tracing.auto.gwdt.ArrayStorageBackend (implements sc.fiji.snt.tracing.auto.gwdt.StorageBackend)
  • sc.fiji.snt.tracing.auto.AutoTraceConfig
  • sc.fiji.snt.tracing.auto.BinaryTracer (implements sc.fiji.snt.tracing.auto.AutoTracer)
  • sc.fiji.snt.tracing.artist.BiSearchArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • sc.fiji.snt.tracing.BiSearchNode (implements sc.fiji.snt.tracing.SearchNode)
  • sc.fiji.snt.BookmarkManager
  • sc.fiji.snt.util.BoundingBox (implements java.lang.Cloneable)
  • sc.fiji.snt.viewer.Bvv
  • sc.fiji.snt.viewer.Bvv.AnnotationOverlay
  • sc.fiji.snt.viewer.Bvv.Keyframe
  • sc.fiji.snt.viewer.Bvv.PathRenderingOptions
  • sc.fiji.snt.viewer.BvvMultiSource
  • sc.fiji.snt.util.CircleCursor3D<T> (implements net.imglib2.Cursor<T>)
    • sc.fiji.snt.util.DiskCursor3D<T>
  • sc.fiji.snt.analysis.CircularModels
  • sc.fiji.snt.analysis.ColorMapper
    • sc.fiji.snt.analysis.AnnotationMapper
    • sc.fiji.snt.analysis.graph.GraphColorMapper<V,E>
    • sc.fiji.snt.analysis.NodeColorMapper
    • sc.fiji.snt.analysis.TreeColorMapper
      • sc.fiji.snt.analysis.MultiTreeColorMapper
      • sc.fiji.snt.viewer.Viewer2D
  • sc.fiji.snt.util.ColorMaps
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • ij.gui.ImageCanvas (implements java.lang.Cloneable, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • sc.fiji.snt.hyperpanes.MultiDThreePanesCanvas
          • sc.fiji.snt.TracerCanvas
            • sc.fiji.snt.MultiPathTracerCanvas
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • sc.fiji.snt.gui.ColorChooserButton
            • sc.fiji.snt.gui.GuiUtils.Buttons.OptionsButton
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • sc.fiji.snt.gui.ColorMenu
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • sc.fiji.snt.gui.FileChooser
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • sc.fiji.snt.gui.OntologyBrowser.AllenCCFRenderer
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.jfree.chart.ChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.event.ChartProgressListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.jfree.chart.event.OverlayChangeListener, java.awt.print.Printable, java.io.Serializable)
            • sc.fiji.snt.analysis.SNTChart
          • sc.fiji.snt.gui.CheckboxSpinner
          • sc.fiji.snt.gui.CollapsiblePanel
          • sc.fiji.snt.gui.FilePicker
          • sc.fiji.snt.viewer.geditor.GraphEditor
          • sc.fiji.snt.gui.OntologyBrowser
          • sc.fiji.snt.gui.OntologyBrowser.OntologyTab
          • sc.fiji.snt.SeedManager
          • sc.fiji.snt.viewer.Viewer3D.ManagerPanel
        • javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • com.mxgraph.swing.mxGraphComponent (implements java.awt.print.Printable)
            • sc.fiji.snt.viewer.geditor.SNTGraphComponent
              • sc.fiji.snt.viewer.geditor.AnnotationGraphComponent
              • sc.fiji.snt.viewer.geditor.SNTPseudographComponent
              • sc.fiji.snt.viewer.geditor.TreeGraphComponent
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextArea
            • org.fife.ui.rtextarea.RTextAreaBase
              • org.fife.ui.rtextarea.RTextArea (implements java.awt.print.Printable)
                • org.fife.ui.rsyntaxtextarea.RSyntaxTextArea (implements org.fife.ui.rsyntaxtextarea.SyntaxConstants)
                  • org.scijava.ui.swing.script.EditorPane (implements javax.swing.event.DocumentListener)
                    • sc.fiji.snt.gui.SNTEditorPane
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • com.formdev.flatlaf.extras.components.FlatTextField (implements com.formdev.flatlaf.extras.components.FlatComponentExtension, com.formdev.flatlaf.extras.components.FlatStyleableComponent)
              • sc.fiji.snt.gui.SearchField
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • com.jidesoft.swing.SearchableBar (implements com.jidesoft.swing.SearchableProvider)
            • sc.fiji.snt.gui.SNTSearchableBar
              • sc.fiji.snt.gui.PathManagerUISearchableBar
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • ij.gui.GenericDialog (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.TextListener, java.awt.event.WindowListener)
            • fiji.util.gui.GenericDialogPlus
              • sc.fiji.snt.gui.EnhancedGenericDialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • sc.fiji.snt.gui.cmds.AutoTraceConfigDialog
            • sc.fiji.snt.FillManagerUI (implements java.awt.event.ActionListener, sc.fiji.snt.FillerProgressCallback)
            • sc.fiji.snt.PathManagerUI (implements javax.swing.event.TreeSelectionListener)
            • sc.fiji.snt.gui.ScriptRecorder
            • sc.fiji.snt.SNTUI
            • sc.fiji.snt.gui.SWCExportDialog
            • sc.fiji.snt.gui.SWCImportDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • sc.fiji.snt.gui.MeasureUI
            • sc.fiji.snt.gui.SNTInterpreterWindow
              • sc.fiji.snt.gui.SNTREPL
  • sc.fiji.snt.tracing.auto.ComponentReconnector<T>
  • sc.fiji.snt.util.CrossoverFinder
  • sc.fiji.snt.util.CrossoverFinder.Config
  • sc.fiji.snt.util.CrossoverFinder.CrossoverEvent
  • sc.fiji.snt.tracing.CrossSectionUtils
  • sc.fiji.snt.CurationManager (implements sc.fiji.snt.analysis.curation.PlausibilityMonitor.WarningListener)
  • sc.fiji.snt.analysis.curation.CurationTags
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • sc.fiji.snt.PathAndFillManager (implements ij3d.UniverseListener)
  • sc.fiji.snt.tracing.DefaultSearchNode (implements java.lang.Comparable<T>, sc.fiji.snt.tracing.SearchNode)
  • org.jgrapht.graph.DefaultWeightedEdge
    • sc.fiji.snt.analysis.graph.AnnotationWeightedEdge
    • sc.fiji.snt.analysis.graph.SWCWeightedEdge
  • sc.fiji.snt.DelineationsManager
  • sc.fiji.snt.gui.DemoRunner
  • sc.fiji.snt.gui.DemoRunner.Demo
  • sc.fiji.snt.analysis.detection.Detection
    • sc.fiji.snt.analysis.PeripathDetector.Detection
  • sc.fiji.snt.analysis.detection.DetectorUtils
  • sc.fiji.snt.tracing.cost.Difference (implements sc.fiji.snt.tracing.cost.Cost)
    • sc.fiji.snt.tracing.cost.DifferenceSq
  • sc.fiji.snt.tracing.heuristic.Dijkstra (implements sc.fiji.snt.tracing.heuristic.Heuristic)
  • sc.fiji.snt.tracing.auto.gwdt.DiskBackedStorageBackend (implements sc.fiji.snt.tracing.auto.gwdt.StorageBackend)
  • sc.fiji.snt.annotation.DrosophilaCompartment (implements sc.fiji.snt.annotation.BrainAnnotation)
  • sc.fiji.snt.annotation.DrosophilaUtils
  • sc.fiji.snt.gui.cmds.EnableSciViewUpdateSiteCmd (implements org.scijava.command.Command)
  • sc.fiji.snt.tracing.heuristic.Euclidean (implements sc.fiji.snt.tracing.heuristic.Heuristic)
  • sc.fiji.snt.gui.FileDrop
  • sc.fiji.snt.Fill
  • sc.fiji.snt.Fill.Node
  • sc.fiji.snt.FillConverter
  • sc.fiji.snt.tracing.artist.FillerThreadArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • sc.fiji.snt.io.FlyCircuitLoader (implements sc.fiji.snt.io.RemoteSWCLoader)
  • sc.fiji.snt.analysis.graph.GraphUtils
  • sc.fiji.snt.viewer.GraphViewer
  • sc.fiji.snt.analysis.GroupedTreeStatistics
  • sc.fiji.snt.analysis.growth.GrowthAnalysisResults
  • sc.fiji.snt.analysis.growth.GrowthAnalyzer
  • sc.fiji.snt.gui.GuiUtils
  • sc.fiji.snt.gui.GuiUtils.Buttons
  • sc.fiji.snt.gui.GuiUtils.JTables
  • sc.fiji.snt.gui.GuiUtils.JTables.DetachableTable
  • sc.fiji.snt.gui.GuiUtils.JTables.VisitingZoom
  • sc.fiji.snt.gui.GuiUtils.JTrees
  • sc.fiji.snt.gui.GuiUtils.MenuItems
  • sc.fiji.snt.gui.GuiUtils.SplitPanes
  • sc.fiji.snt.tracing.auto.GWDTTracerFactory
  • sc.fiji.snt.gui.IconFactory
  • sc.fiji.snt.util.ImgUtils
  • sc.fiji.snt.util.ImpUtils
  • sc.fiji.snt.annotation.InsectBrainCompartment (implements sc.fiji.snt.annotation.BrainAnnotation)
  • sc.fiji.snt.io.InsectBrainLoader
  • sc.fiji.snt.io.InsectBrainLoader.NeuronInfo
  • sc.fiji.snt.annotation.InsectBrainUtils
  • sc.fiji.snt.analysis.detection.LabelProximityDetector
  • sc.fiji.snt.analysis.detection.LabelProximityDetector.Config
  • sc.fiji.snt.seed.LabelsToSeeds
  • sc.fiji.snt.filter.Lazy
  • sc.fiji.snt.util.LinAlgUtils
  • sc.fiji.snt.tracing.image.ListSearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • sc.fiji.snt.util.Logger
  • sc.fiji.snt.util.LSystemsTree (implements ij.plugin.PlugIn)
  • sc.fiji.snt.tracing.image.MapSearchImage<V> (implements sc.fiji.snt.tracing.image.SearchImage<V>)
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
    • sc.fiji.snt.gui.ComponentMover
  • sc.fiji.snt.io.MouseLightLoader
  • sc.fiji.snt.io.MouseLightQuerier
  • sc.fiji.snt.hyperpanes.MultiDThreePanes (implements sc.fiji.snt.hyperpanes.PaneOwner)
    • sc.fiji.snt.SNT (implements sc.fiji.snt.HessianGenerationCallback, sc.fiji.snt.SearchProgressCallback)
  • sc.fiji.snt.analysis.MultiSpectralRefiner (implements java.util.concurrent.Callable<V>)
  • sc.fiji.snt.viewer.MultiViewer2D
  • sc.fiji.snt.viewer.MultiViewer3D
  • com.mxgraph.util.mxEventSource
    • com.mxgraph.view.mxGraph
      • org.jgrapht.ext.JGraphXAdapter<V,E> (implements org.jgrapht.event.GraphListener<V,E>)
        • sc.fiji.snt.viewer.geditor.SNTGraphAdapter<V,E>
          • sc.fiji.snt.viewer.geditor.AnnotationGraphAdapter
          • sc.fiji.snt.viewer.geditor.SNTPseudographAdapter<V,E>
          • sc.fiji.snt.viewer.geditor.TreeGraphAdapter
  • com.mxgraph.layout.mxGraphLayout (implements com.mxgraph.layout.mxIGraphLayout)
    • com.mxgraph.layout.mxCircleLayout
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutGrouped
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutScaled
      • sc.fiji.snt.viewer.geditor.mxCircleLayoutSorted
  • sc.fiji.snt.io.NDFImporter
  • sc.fiji.snt.NearPoint (implements java.lang.Comparable<T>)
  • sc.fiji.snt.analysis.growth.NeuriteGrowthData
  • sc.fiji.snt.io.NeurolucidaImporter
  • sc.fiji.snt.io.NeuroMorphoLoader (implements sc.fiji.snt.io.RemoteSWCLoader)
  • sc.fiji.snt.analysis.NodeStatistics<T>
  • sc.fiji.snt.NotesUI
  • sc.fiji.snt.viewer.OBJMesh
  • sc.fiji.snt.io.OmeAxisUtils
  • sc.fiji.snt.tracing.cost.OneMinusErf (implements sc.fiji.snt.tracing.cost.Cost)
  • sc.fiji.snt.gui.PaletteOptions
  • sc.fiji.snt.Path (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • sc.fiji.snt.PathAndFillManager.AllPointsIterator (implements java.util.Iterator<E>)
  • sc.fiji.snt.util.PathCursor<T> (implements net.imglib2.Cursor<T>)
  • sc.fiji.snt.PathDownsampler
  • sc.fiji.snt.PathFitter (implements java.util.concurrent.Callable<V>)
  • sc.fiji.snt.PathNodeCanvas
  • sc.fiji.snt.analysis.PathStraightener
  • sc.fiji.snt.analysis.PCAnalyzer
  • sc.fiji.snt.analysis.PCAnalyzer.PrincipalAxis
  • sc.fiji.snt.analysis.detection.PeripathDetector
  • sc.fiji.snt.analysis.PeripathDetector
  • sc.fiji.snt.analysis.detection.PeripathDetector.Config
    • sc.fiji.snt.analysis.PeripathDetector.Config
  • sc.fiji.snt.analysis.PersistenceAnalyzer
  • sc.fiji.snt.analysis.curation.PlausibilityCalibrator
  • sc.fiji.snt.analysis.curation.PlausibilityCalibrator.CalibrationResult
  • sc.fiji.snt.analysis.curation.PlausibilityCheck
  • sc.fiji.snt.analysis.curation.PlausibilityCheck.DeepCheck
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.PathOverlap
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.RadiusJumps
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.RadiusMonotonicity
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.SignalQuality
  • sc.fiji.snt.analysis.curation.PlausibilityCheck.LiveCheck
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.BranchAngle
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.ConstantRadii
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.DirectionContinuity
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.RadiusContinuity
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.SomaDistance
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.TerminalBranchLength
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.TortuosityConsistency
  • sc.fiji.snt.analysis.curation.PlausibilityMonitor
  • ij.gui.Plot (implements java.lang.Cloneable)
    • sc.fiji.snt.analysis.sholl.gui.ShollPlot
  • sc.fiji.snt.util.PointDeduplicator
  • sc.fiji.snt.util.PointInImage (implements java.lang.Cloneable, sc.fiji.snt.util.SNTPoint)
    • sc.fiji.snt.Path.PathNode (implements java.lang.Cloneable)
    • sc.fiji.snt.util.PointInCanvas (implements sc.fiji.snt.util.SNTPoint)
    • sc.fiji.snt.util.ShollPoint
    • sc.fiji.snt.util.SWCPoint (implements java.lang.Comparable<T>)
  • sc.fiji.snt.analysis.sholl.math.PolarProfileStats (implements sc.fiji.snt.analysis.sholl.math.ShollStats)
  • sc.fiji.snt.analysis.sholl.Profile (implements sc.fiji.snt.analysis.sholl.ProfileProperties)
  • sc.fiji.snt.analysis.sholl.ProfileEntry (implements java.lang.Comparable<T>)
  • sc.fiji.snt.analysis.ProfileProcessor<T> (implements java.util.concurrent.Callable<V>)
  • sc.fiji.snt.tracing.cost.Reciprocal (implements sc.fiji.snt.tracing.cost.Cost)
  • sc.fiji.snt.analysis.RoiConverter
  • sc.fiji.snt.plugin.ROIExporterCmd (implements org.scijava.command.Command)
  • sc.fiji.snt.analysis.RootAngleAnalyzer
  • sc.fiji.snt.SciViewSNT
  • sc.fiji.snt.gui.ScriptInstaller (implements javax.swing.event.MenuKeyListener)
  • sc.fiji.snt.tracing.artist.SearchArtistFactory
  • sc.fiji.snt.tracing.image.SearchImageStack<V> (implements java.lang.Iterable<T>)
  • sc.fiji.snt.tracing.artist.SearchThreadArtist (implements sc.fiji.snt.tracing.artist.SearchArtist)
  • sc.fiji.snt.seed.SeedOverlay
  • sc.fiji.snt.seed.SeedOverlayCanvasHandler
  • sc.fiji.snt.SeedOverlayRenderer
  • sc.fiji.snt.seed.SeedPoint (implements sc.fiji.snt.util.SNTPoint)
  • sc.fiji.snt.seed.SeedPointEditDialog
  • sc.fiji.snt.seed.SeedRois
  • sc.fiji.snt.analysis.ShollAnalyzer
  • sc.fiji.snt.analysis.sholl.gui.ShollOverlay (implements sc.fiji.snt.analysis.sholl.ProfileProperties)
  • sc.fiji.snt.analysis.sholl.ShollUtils
  • sc.fiji.snt.util.SigmaUtils
  • sc.fiji.snt.plugin.SkeletonizerCmd (implements org.scijava.command.Command)
  • sc.fiji.snt.util.SNTColor
  • sc.fiji.snt.gui.SNTCommandFinder
  • sc.fiji.snt.event.SNTEvent
  • sc.fiji.snt.gui.SNTInterpreterPane (implements org.scijava.widget.UIComponent<C>)
  • sc.fiji.snt.SNTPrefs
  • sc.fiji.snt.gui.SNTPromptPane (implements org.scijava.widget.UIComponent<C>)
  • sc.fiji.snt.SNTUtils
  • sc.fiji.snt.tracing.auto.SomaUtils
  • sc.fiji.snt.tracing.auto.gwdt.SparseStorageBackend (implements sc.fiji.snt.tracing.auto.gwdt.StorageBackend)
  • sc.fiji.snt.io.SpimDataUtils
  • sc.fiji.snt.gui.cmds.SpotSpineLoaderCmd (implements org.scijava.command.Command)
  • sc.fiji.snt.plugin.ij1.Strahler (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • sc.fiji.snt.analysis.StrahlerAnalyzer
  • sc.fiji.snt.plugin.ij1.SummarizeSkeleton (implements ij.plugin.filter.PlugInFilter)
  • sc.fiji.snt.tracing.image.SupplierUtil
  • sc.fiji.snt.tracing.image.SupplierUtil.ArraySearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • sc.fiji.snt.tracing.image.SupplierUtil.ListSearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • sc.fiji.snt.tracing.image.SupplierUtil.MapSearchImageSupplier<V> (implements java.util.function.Supplier<T>)
  • sc.fiji.snt.gui.SwingSafeResult
  • sc.fiji.snt.analysis.sholl.parsers.TabularParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
  • java.lang.Thread (implements java.lang.Runnable)
    • sc.fiji.snt.gui.CostPalette
    • sc.fiji.snt.tracing.ManualTracerThread (implements sc.fiji.snt.tracing.SearchInterface)
    • sc.fiji.snt.gui.SigmaPalette
    • sc.fiji.snt.tracing.TubularGeodesicsTracer (implements sc.fiji.snt.tracing.SearchInterface)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.io.IOException
        • sc.fiji.snt.io.SWCExportException
      • java.lang.RuntimeException
        • java.lang.IllegalArgumentException
          • sc.fiji.snt.analysis.UnknownMetricException
      • org.xml.sax.SAXException
        • sc.fiji.snt.io.TracesFileFormatException
  • sc.fiji.snt.Tree (implements java.lang.Cloneable, sc.fiji.snt.TreeProperties)
  • sc.fiji.snt.analysis.sholl.parsers.TreeParser (implements sc.fiji.snt.analysis.sholl.parsers.Parser)
  • sc.fiji.snt.util.TreeToRaster
  • sc.fiji.snt.util.TreeUtils
  • sc.fiji.snt.filter.UnaryComputerOpCellLoader<T,S,R> (implements net.imglib2.cache.img.CellLoader<T>)
  • sc.fiji.snt.annotation.VFBUtils
  • sc.fiji.snt.viewer.Viewer3D
  • sc.fiji.snt.viewer.Viewer3D.Utils
  • trainableSegmentation.Weka_Segmentation (implements ij.plugin.PlugIn)
    • sc.fiji.snt.plugin.TWSLoaderCmd (implements org.scijava.command.Command)
  • sc.fiji.snt.annotation.ZBAtlasUtils

Interface Hierarchy

• sc.fiji.snt.tracing.auto.AutoTracer
• sc.fiji.snt.annotation.BrainAnnotation
• sc.fiji.snt.gui.ColorChangedListener
• sc.fiji.snt.tracing.cost.Cost
• sc.fiji.snt.gui.CostPalette.Listener
• sc.fiji.snt.gui.FileDrop.Listener
• sc.fiji.snt.analysis.growth.GrowthAnalysisResults.NeuriteSelectionCriterion
• sc.fiji.snt.HessianGenerationCallback
• sc.fiji.snt.tracing.heuristic.Heuristic
• java.lang.Iterable<T>
  • sc.fiji.snt.tracing.image.SearchImage<V>
• sc.fiji.snt.hyperpanes.PaneOwner
• sc.fiji.snt.PathTransformer
• sc.fiji.snt.analysis.curation.PlausibilityMonitor.WarningListener
• sc.fiji.snt.analysis.sholl.ProfileProperties
  • sc.fiji.snt.analysis.sholl.parsers.Parser
• sc.fiji.snt.io.RemoteSWCLoader
• sc.fiji.snt.tracing.artist.SearchArtist
• sc.fiji.snt.tracing.SearchInterface
• sc.fiji.snt.tracing.SearchNode
• sc.fiji.snt.SearchProgressCallback
  • sc.fiji.snt.FillerProgressCallback
• sc.fiji.snt.seed.SeedOverlay.SeedOverlayListener
• sc.fiji.snt.analysis.sholl.math.ShollStats
• sc.fiji.snt.gui.SigmaPaletteListener
• sc.fiji.snt.event.SNTListener
• sc.fiji.snt.util.SNTPoint
• sc.fiji.snt.tracing.auto.gwdt.StorageBackend
• sc.fiji.snt.TreeProperties

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • sc.fiji.snt.tracing.auto.AbstractGWDTTracer.WaypointBiasSource
    • sc.fiji.snt.tracing.auto.AutoTracer.SeedRole
    • sc.fiji.snt.tracing.BiSearchNode.State
    • sc.fiji.snt.analysis.CircularModels.Domain
    • sc.fiji.snt.FillConverter.ResultType
    • sc.fiji.snt.FillManagerUI.State
    • sc.fiji.snt.analysis.growth.GrowthAnalyzer.GrowthPhaseType
    • sc.fiji.snt.gui.IconFactory.GLYPH
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.Severity
    • sc.fiji.snt.analysis.ProfileProcessor.Metric
    • sc.fiji.snt.analysis.ProfileProcessor.Shape
    • sc.fiji.snt.seed.SeedOverlay.ColorMode
    • sc.fiji.snt.analysis.sholl.math.ShollStats.DataMode
    • sc.fiji.snt.SNT.CostType
    • sc.fiji.snt.SNT.FilterType
    • sc.fiji.snt.SNT.HeuristicType
    • sc.fiji.snt.SNT.SearchImageType
    • sc.fiji.snt.SNT.SearchType
    • sc.fiji.snt.viewer.Viewer3D.AnimationMode
    • sc.fiji.snt.viewer.Viewer3D.RotationAxis
    • sc.fiji.snt.viewer.Viewer3D.ViewMode

Record Class Hierarchy

• java.lang.Object
  • java.lang.Record
    • sc.fiji.snt.analysis.CircularModels.VonMisesFit
    • sc.fiji.snt.analysis.curation.CurationTags.Partition
    • sc.fiji.snt.analysis.growth.GrowthAnalysisResults.GrowthSummaryStatistics
    • sc.fiji.snt.analysis.growth.GrowthAnalyzer.ElongationEvent
    • sc.fiji.snt.analysis.growth.GrowthAnalyzer.GrowthPhase
    • sc.fiji.snt.analysis.growth.GrowthAnalyzer.RetractionEvent
    • sc.fiji.snt.analysis.growth.GrowthAnalyzer.TimePoint
    • sc.fiji.snt.util.ImgUtils.SliceResult<T>
    • sc.fiji.snt.MultiPathTracerCanvas.Entry
    • sc.fiji.snt.analysis.MultiSpectralRefiner.Parameters
    • sc.fiji.snt.io.OmeAxisUtils.OmeMetadata
    • sc.fiji.snt.analysis.curation.PlausibilityCalibrator.CheckSummary
    • sc.fiji.snt.analysis.curation.PlausibilityCheck.Warning (implements java.lang.Comparable<T>)
    • sc.fiji.snt.analysis.sholl.math.PolarProfileStats.PolarPeak
    • sc.fiji.snt.analysis.sholl.math.PolarProfileStats.Report
    • sc.fiji.snt.tracing.auto.SomaUtils.SomaResult
    • sc.fiji.snt.util.TreeUtils.EndpointClusterAnalysis
    • sc.fiji.snt.util.TreeUtils.EndpointMatch