Package sc.fiji.snt.analysis.sholl

Class ProfileEntry

java.lang.Object

sc.fiji.snt.analysis.sholl.ProfileEntry

All Implemented Interfaces:

Comparable<ProfileEntry>

public class ProfileEntry
extends Object
implements Comparable<ProfileEntry>

Utility class defining a Sholl profile entry

Author:

Tiago Ferreira

Field Summary

Fields

Modifier and Type	Field	Description
double	count	The number of intersection counts associated at this entry's radius
double	extra	An ad-hoc measurement associated with this entry's radius
double	length	The total cable length associated with this entry's radius
Set<ShollPoint>	points	List of intersection points associated with the entry's radius (in spatially calibrated units)
double	radius	The entry's radius length (in physical units)

Constructor Summary

Constructors

Constructor	Description
ProfileEntry(Number r, Number count)
ProfileEntry(Number r, Number count, Number length)
ProfileEntry(Number r, Number count, Number length, Set<ShollPoint> points)
ProfileEntry(Number r, Number count, Set<ShollPoint> points)
ProfileEntry(Number r, Set<ShollPoint> points)

Method Summary

Modifier and Type	Method	Description
void	addPoint(ShollPoint point)
void	assignPoints(Set<ShollPoint> points)
int	compareTo(ProfileEntry other)
double	radiusSquared()
void	removePoint(ShollPoint point)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

radius

public double radius

The entry's radius length (in physical units)

count

public double count

The number of intersection counts associated at this entry's radius

length

public double length

The total cable length associated with this entry's radius

extra

public double extra

An ad-hoc measurement associated with this entry's radius

points

public Set<ShollPoint> points

List of intersection points associated with the entry's radius (in spatially calibrated units)

Constructor Details

ProfileEntry

public ProfileEntry(Number r,
 Number count,
 Set<ShollPoint> points)

ProfileEntry

public ProfileEntry(Number r,
 Number count,
 Number length,
 Set<ShollPoint> points)

ProfileEntry

public ProfileEntry(Number r,
 Set<ShollPoint> points)

ProfileEntry

public ProfileEntry(Number r,
 Number count)

ProfileEntry

public ProfileEntry(Number r,
 Number count,
 Number length)

Method Details

addPoint

public void addPoint(ShollPoint point)

assignPoints

public void assignPoints(Set<ShollPoint> points)

removePoint

public void removePoint(ShollPoint point)

radiusSquared

public double radiusSquared()

compareTo

public int compareTo(ProfileEntry other)

Specified by:

compareTo in interface Comparable<ProfileEntry>