Uses of Class
sc.fiji.snt.analysis.sholl.Profile

Packages that use Profile

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.
sc.fiji.snt.analysis.sholl.gui	GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
sc.fiji.snt.analysis.sholl.math	Statistical analysis of Sholl data
sc.fiji.snt.analysis.sholl.parsers	Parsers to retrieve Sholl profiles from multiple sources (2D/3D images, reconstructions, and tables)
sc.fiji.snt.plugin	SNT add-ons as IJ2 commands

Uses of Profile in sc.fiji.snt.analysis

Methods in sc.fiji.snt.analysis with parameters of type Profile

Modifier and Type	Method	Description
void	TreeColorMapper.map(Tree tree, Profile profile, net.imglib2.display.ColorTable colorTable)	Colorizes a tree using Sholl data.

Uses of Profile in sc.fiji.snt.analysis.sholl

Methods in sc.fiji.snt.analysis.sholl that return Profile

Modifier and Type	Method	Description
static Profile	ShollUtils.demoProfile()
Profile	Profile.duplicate()

Uses of Profile in sc.fiji.snt.analysis.sholl.gui

Methods in sc.fiji.snt.analysis.sholl.gui with parameters of type Profile

Modifier and Type	Method	Description
static String	ShollPlot.defaultXtitle(Profile profile)

Constructors in sc.fiji.snt.analysis.sholl.gui with parameters of type Profile

Modifier	Constructor	Description
	ShollOverlay(Profile profile)
	ShollOverlay(Profile profile, ij.ImagePlus imp)
	ShollOverlay(Profile profile, ij.ImagePlus imp, boolean clearExistingROIs)
	ShollPlot(ShollStats.DataMode dataMode, Profile... profiles)
	ShollPlot(Profile profile)
	ShollPlot(Profile... profiles)
	ShollTable(Profile profile)	Instantiates a new table from a Profile

Uses of Profile in sc.fiji.snt.analysis.sholl.math

Fields in sc.fiji.snt.analysis.sholl.math declared as Profile

Modifier and Type	Field	Description
protected final Profile	CommonStats.profile
protected final Profile	CommonStats.profile

Methods in sc.fiji.snt.analysis.sholl.math that return Profile

Modifier and Type	Method	Description
Profile	PolarProfileStats.getProfile()
Profile	ShollStats.getProfile()
protected Profile	LinearProfileStats.getProfileCopy()

Constructors in sc.fiji.snt.analysis.sholl.math with parameters of type Profile

Modifier	Constructor	Description
	Comparator(Profile profile1, Profile profile2)
	LinearProfileStats(Profile profile)	Instantiates the Linear Profile Statistics.
	LinearProfileStats(Profile profile, ShollStats.DataMode dataMode)	Instantiates the Linear Profile Statistics.
	NormalizedProfileStats(Profile profile, int normalizationFlag)
	NormalizedProfileStats(Profile profile, int normalizationFlag, int methodFlag)
	NormalizedProfileStats(Profile profile, ShollStats.DataMode dataMode, int normalizationFlag)
	NormalizedProfileStats(Profile profile, ShollStats.DataMode dataMode, int normalizationFlag, int methodFlag)
	PolarProfileStats(Profile profile)	Instantiates a new PolarProfileStats from an existing Sholl Profile, with the default angular resolution (10°).
	PolarProfileStats(Profile profile, ShollStats.DataMode dataMode, double angleStepSize)	Instantiates a new PolarProfileStats from a Profile with custom angular resolution.

Uses of Profile in sc.fiji.snt.analysis.sholl.parsers

Fields in sc.fiji.snt.analysis.sholl.parsers declared as Profile

Modifier and Type	Field	Description
protected Profile	ImageParser.profile

Methods in sc.fiji.snt.analysis.sholl.parsers that return Profile

Modifier and Type	Method	Description
Profile	ImageParser.getProfile()
Profile	ImageParser2D.getProfile()
Profile	ImageParser3D.getProfile()
Profile	Parser.getProfile()	Gets the Sholl profile generated by the parsing operation.
Profile	TabularParser.getProfile()
Profile	TreeParser.getProfile()

Uses of Profile in sc.fiji.snt.plugin

Methods in sc.fiji.snt.plugin that return Profile

Modifier and Type	Method	Description
protected Profile	ShollAnalysisImgCommonCmd.getProfile()

Methods in sc.fiji.snt.plugin with parameters of type Profile

Modifier and Type	Method	Description
protected void	ShollAnalysisImgCommonCmd.setProfile(Profile profile)