Uses of Package
sc.fiji.snt

Packages that use sc.fiji.snt

Package	Description
sc.fiji.snt	SNT core classes
sc.fiji.snt.analysis	Analysis of Trees.
sc.fiji.snt.analysis.curation	Classes for curation of reconstructions, as implemented by the "Curation Assistant".
sc.fiji.snt.analysis.detection	Feature detectors for traced paths.
sc.fiji.snt.analysis.graph	Classes for handling neuronal reconstructions as graphs
sc.fiji.snt.analysis.growth	Classes for growth analysis of neurites across time
sc.fiji.snt.analysis.sholl.parsers	Parsers to retrieve Sholl profiles from multiple sources (2D/3D images, reconstructions, and tables)
sc.fiji.snt.annotation	Classes handling neuropil annotations and atlases metadata.
sc.fiji.snt.filter	Filters for detection of tube-like structures
sc.fiji.snt.gui	Customizations and commands for SNT's GUI.
sc.fiji.snt.gui.cmds	Scijava-based GUIs for SNT built-in commands.
sc.fiji.snt.io	Classes for importing reconstructions into SNT.
sc.fiji.snt.plugin	SNT add-ons as IJ2 commands
sc.fiji.snt.seed
sc.fiji.snt.tracing	Path-finding algorithms for interactive neuron tracing.
sc.fiji.snt.tracing.artist	Artist classes provide visual feedback for tracing algorithm execution.
sc.fiji.snt.tracing.auto	Automatic neuron tracing algorithms that reconstruct complete neuronal morphologies from images without user interaction.
sc.fiji.snt.tracing.image	Data structures used to keep track of encountered nodes during image-based searches for classes implementing SearchInterface
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.
sc.fiji.snt.viewer	Visualization of reconstructions

Classes in sc.fiji.snt used by sc.fiji.snt

Class	Description
BookmarkManager	Implements the Bookmark Manager pane.
CurationManager	Implements the Curation Assistant pane in SNT's UI.
DelineationsManager	Implements the Delineation Analysis pane.
Fill	Defines a filled structure.
Fill.Node	Defines a node in a filled structure.
FillConverter.ResultType
FillerProgressCallback	The FillerProgressCallback interface extends SearchProgressCallback and provides additional methods specific to monitoring the progress of filler algorithms.
FillManagerUI	Implements the Fill Manager dialog.
FillManagerUI.State
HessianGenerationCallback	Represents a callback interface for monitoring the progress of Hessian filtering.
MultiPathTracerCanvas.Entry	One painted path: the path itself, its base color, and whether to highlight it
NearPoint	This class encapsulates the relationship between an arbitrary point (nearPoint.x,nearPoint.y,nearPoint.z) close to a particular point on a particular path.
NotesUI	Implements the Notepad pane.
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
Path.PathNode	Enhanced PointInImage that stores all node-specific properties.
PathAndFillManager	The PathAndFillManager is responsible for importing, handling and managing of Paths and Fills.
PathFitter	Class for fitting circular cross-sections around existing nodes of a Path in order to compute radii (node thickness) and midpoint refinement of existing coordinates.
PathManagerUI	Implements the Path Manager Dialog.
PathNodeCanvas	Convenience class used to render Path nodes (vertices) in an TracerCanvas.
PathTransformer	Classes transforming Paths should implement this interface.
SciViewSNT	Bridges SNT to SciView, allowing Trees to be rendered as scenery objects
SearchProgressCallback	Callback interface for monitoring progress of a search operation during path tracing.
SNT	Implements the SNT plugin.
SNT.CostType
SNT.FilterType
SNT.HeuristicType
SNT.SearchImageType
SNT.SearchType
SNTPrefs	Class handling SNT preferences.
SNTUI	Implements SNT's main dialog.
TracerCanvas	Provides rendering capabilities for visualizing paths, overlays, and additional interactive elements in an ImageJ canvas.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).
TreeProperties	Allows standardized metadata to be associated to a Tree.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
SNT	Implements the SNT plugin.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.curation

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.detection

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.graph

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.growth

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.

Classes in sc.fiji.snt used by sc.fiji.snt.analysis.sholl.parsers

Class	Description
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.annotation

Class	Description
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.filter

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.

Classes in sc.fiji.snt used by sc.fiji.snt.gui

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
PathManagerUI	Implements the Path Manager Dialog.
SNT	Implements the SNT plugin.
SNT.CostType
SNTUI	Implements SNT's main dialog.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.gui.cmds

Class	Description
SNT	Implements the SNT plugin.
SNTService	Service for accessing and scripting the active instance of SNT.
SNTUI	Implements SNT's main dialog.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.io

Class	Description
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.plugin

Class	Description
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.seed

Class	Description
SNT	Implements the SNT plugin.
TracerCanvas	Provides rendering capabilities for visualizing paths, overlays, and additional interactive elements in an ImageJ canvas.

Classes in sc.fiji.snt used by sc.fiji.snt.tracing

Class	Description
Fill	Defines a filled structure.
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
SearchProgressCallback	Callback interface for monitoring progress of a search operation during path tracing.
SNT	Implements the SNT plugin.
SNT.SearchImageType

Classes in sc.fiji.snt used by sc.fiji.snt.tracing.artist

Class	Description
TracerCanvas	Provides rendering capabilities for visualizing paths, overlays, and additional interactive elements in an ImageJ canvas.

Classes in sc.fiji.snt used by sc.fiji.snt.tracing.auto

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
SNT.FilterType
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.tracing.image

Class	Description
SNT.SearchImageType

Classes in sc.fiji.snt used by sc.fiji.snt.util

Class	Description
Path	This class represents a traced segment (i.e., a Path) in a reconstruction.
PathTransformer	Classes transforming Paths should implement this interface.
SNT	Implements the SNT plugin.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).

Classes in sc.fiji.snt used by sc.fiji.snt.viewer

Class	Description
BookmarkManager	Implements the Bookmark Manager pane.
SNT	Implements the SNT plugin.
Tree	Utility class to access a Collection of Paths (typically a complete reconstruction).