Uses of Class
sc.fiji.snt.util.ShollPoint

Packages that use ShollPoint

Package	Description
sc.fiji.snt.analysis.sholl	Sholl analysis of Images, pre-sampled data and Trees.
sc.fiji.snt.analysis.sholl.gui	GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
sc.fiji.snt.analysis.sholl.math	Statistical analysis of Sholl data
sc.fiji.snt.analysis.sholl.parsers	Parsers to retrieve Sholl profiles from multiple sources (2D/3D images, reconstructions, and tables)
sc.fiji.snt.util	Miscellaneous SNT utilities, including classes defining reconstruction nodes.

Uses of ShollPoint in sc.fiji.snt.analysis.sholl

Fields in sc.fiji.snt.analysis.sholl with type parameters of type ShollPoint

Modifier and Type	Field	Description
Set<ShollPoint>	ProfileEntry.points	List of intersection points associated with the entry's radius (in spatially calibrated units)

Methods in sc.fiji.snt.analysis.sholl that return ShollPoint

Modifier and Type	Method	Description
ShollPoint	Profile.center()

Methods in sc.fiji.snt.analysis.sholl that return types with arguments of type ShollPoint

Modifier and Type	Method	Description
List<Set<ShollPoint>>	Profile.points()

Methods in sc.fiji.snt.analysis.sholl with parameters of type ShollPoint

Modifier and Type	Method	Description
void	ProfileEntry.addPoint(ShollPoint point)
void	ProfileEntry.removePoint(ShollPoint point)
void	Profile.setCenter(ShollPoint center)

Method parameters in sc.fiji.snt.analysis.sholl with type arguments of type ShollPoint

Modifier and Type	Method	Description
void	ProfileEntry.assignPoints(Set<ShollPoint> points)

Constructor parameters in sc.fiji.snt.analysis.sholl with type arguments of type ShollPoint

Modifier	Constructor	Description
	ProfileEntry(Number r, Number count, Number length, Set<ShollPoint> points)
	ProfileEntry(Number r, Number count, Set<ShollPoint> points)
	ProfileEntry(Number r, Set<ShollPoint> points)

Uses of ShollPoint in sc.fiji.snt.analysis.sholl.gui

Methods in sc.fiji.snt.analysis.sholl.gui with parameters of type ShollPoint

Modifier and Type	Method	Description
void	ShollPlot.markPoint(ShollPoint pCentroid, int markShape, int markSize)	Highlights a point on a plot without listing it on the Plot's table.
void	ShollPlot.markPoint(ShollPoint point, Color color)	Highlights a point on a plot using the default marker.

Uses of ShollPoint in sc.fiji.snt.analysis.sholl.math

Methods in sc.fiji.snt.analysis.sholl.math that return ShollPoint

Modifier and Type	Method	Description
ShollPoint	LinearProfileStats.getCenteredMaximum()
ShollPoint	LinearProfileStats.getCenteredMaximum(boolean fittedData)	Returns the average coordinates of all maxima.
ShollPoint	LinearProfileStats.getCentroid()
ShollPoint	LinearProfileStats.getCentroid(boolean fittedData)	Retrieves the centroid from all pairs of data (radius, inters. counts).
ShollPoint	LinearProfileStats.getPolygonCentroid()
ShollPoint	LinearProfileStats.getPolygonCentroid(boolean fittedData)	Calculates the centroid from all (radius, inters. counts) pairs assuming such points define a non-self-intersecting closed polygon.

Methods in sc.fiji.snt.analysis.sholl.math that return types with arguments of type ShollPoint

Modifier and Type	Method	Description
ArrayList<ShollPoint>	LinearProfileStats.getMaxima()
ArrayList<ShollPoint>	LinearProfileStats.getMaxima(boolean fittedData)	Returns a list of all the points in the linear Sholl profile associated with the highest intersections count
Set<ShollPoint>	LinearProfileStats.getPolynomialMaxima(double lowerBound, double upperBound, double initialGuess)	Calculates local maxima (critical points at which the derivative of the polynomial is zero) within the specified interval.

Uses of ShollPoint in sc.fiji.snt.analysis.sholl.parsers

Fields in sc.fiji.snt.analysis.sholl.parsers declared as ShollPoint

Modifier and Type	Field	Description
protected ShollPoint	ImageParser.center

Uses of ShollPoint in sc.fiji.snt.util

Methods in sc.fiji.snt.util that return ShollPoint

Modifier and Type	Method	Description
static ShollPoint	ShollPoint.fromString(String string)

Method parameters in sc.fiji.snt.util with type arguments of type ShollPoint

Modifier and Type	Method	Description
static void	ShollPoint.scale(Collection<ShollPoint> points, ij.measure.Calibration cal)