Uses of Record Class
sc.fiji.snt.analysis.curation.PlausibilityCheck.Measurements

Packages that use PlausibilityCheck.Measurements

Package	Description
sc.fiji.snt.analysis.curation	Classes for curation of reconstructions, as implemented by the "Curation Assistant".

Uses of PlausibilityCheck.Measurements in sc.fiji.snt.analysis.curation

Fields in sc.fiji.snt.analysis.curation declared as PlausibilityCheck.Measurements

Modifier and Type	Field	Description
static final PlausibilityCheck.Measurements	PlausibilityCheck.Measurements.EMPTY	Sentinel returned when no measurements can be produced.

Methods in sc.fiji.snt.analysis.curation that return PlausibilityCheck.Measurements

Modifier and Type	Method	Description
PlausibilityCheck.Measurements	PlausibilityCheck.BoundaryProximity.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.BranchAngle.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.BundledPaths.measure(Collection<Path> paths)	The measurement is each detected proximity-run's median angle: the histogram lets the user see how their maxParallelAngleDeg sits in the angle distribution.
PlausibilityCheck.Measurements	PlausibilityCheck.Crossovers.measure(Collection<Path> paths)	Sweeps CrossoverFinder at 5x the current proximity threshold so the histogram shows context around the cutoff, not just flagged events.
PlausibilityCheck.Measurements	PlausibilityCheck.DeepCheck.measure(Collection<Path> paths)	Computes the full distribution of this check's metric across paths, without applying the warning threshold.
PlausibilityCheck.Measurements	PlausibilityCheck.DirectionContinuity.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.IntensityValley.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.InterForkDistance.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.InvalidRadius.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.LiveCheck.measure(Collection<Path> paths)	Computes the full distribution of this check's metric across paths, without applying the warning threshold.
PlausibilityCheck.Measurements	PlausibilityCheck.RadiusContinuity.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.RadiusJumps.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.RadiusMonotonicity.measure(Collection<Path> paths)	Collects every monotonic-increase run of length >= 2 (regardless of the current minIncreasingRun threshold) so the histogram shows the full distribution of run lengths in the reconstruction.
PlausibilityCheck.Measurements	PlausibilityCheck.SignalQuality.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.SomaDistance.measure(Collection<Path> paths)	Measures the start-to-nearest-reference distance for every path's first node.
PlausibilityCheck.Measurements	PlausibilityCheck.TerminalBranchLength.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.TerminalNearAncestor.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.TortuosityConsistency.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.UncertainTerminal.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityCheck.ZExtentRatio.measure(Collection<Path> paths)
PlausibilityCheck.Measurements	PlausibilityMonitor.measure(PlausibilityCheck.DeepCheck deepCheck, Collection<Path> paths)	Collects the raw distribution of deepCheck's metric across paths without applying its warning threshold.
PlausibilityCheck.Measurements	PlausibilityMonitor.measure(PlausibilityCheck.LiveCheck liveCheck, Collection<Path> paths)	Collects the raw distribution of liveCheck's metric across paths without applying its warning threshold.
PlausibilityCheck.Measurements	PlausibilityCheck.Measurements.withHint(String hint)	Returns a copy of this record with emptyHint replaced.

Method parameters in sc.fiji.snt.analysis.curation with type arguments of type PlausibilityCheck.Measurements

Modifier and Type	Method	Description
static JButton	CurationHistograms.button(String checkName, Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn, Supplier<Collection<Path>> pathsSnapshot, DoubleSupplier primaryThreshold, DoubleSupplier secondaryThreshold, CurationHistograms.Side side, Component parent)	Histogram button supporting both single- and two-threshold checks.
static JButton	CurationHistograms.button(String checkName, Function<Collection<Path>,PlausibilityCheck.Measurements> measureFn, Supplier<Collection<Path>> pathsSnapshot, DoubleSupplier threshold, CurationHistograms.Side side, Component parent)	Single-sided histogram button (LEFT_FLAGGED or RIGHT_FLAGGED).